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gtcaggtctgccgctacctgtctggtggtttgttacccgcaacatgtgtgtagctcaaaggctagcttgtttgtttgggtcgcgcgtgcctacctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG
species | Zea mays |
transcript | GRMZM2G177912_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|9953349|gb|BE639932.1|BE639932
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAGGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|78120131|gb|DV538515.1|DV538515
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|211114226|gb|FL350275.1|FL350275
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGAWGGCGTTCCCGTCGACACCTAACTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCEST: gi|211267792|gb|FL344631.1|FL344631
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGC
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|211217973|gb|FL307283.1|FL307283
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|67016433|gb|CO445182.1|CO445182
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|71303539|gb|DR787880.1|DR787880
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|67042528|gb|CO468783.1|CO468783
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|211362192|gb|FL333555.1|FL333555
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGTCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|149104624|gb|EE290073.2|EE290073
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|211316704|gb|FL359227.1|FL359227
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|148969238|gb|EE019992.2|EE019992
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|211105804|gb|FL320712.1|FL320712
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|211283545|gb|FL347777.1|FL347777
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCEST: gi|211064773|gb|FL350726.1|FL350726
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTC
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACEST: gi|211460898|gb|FL364621.1|FL364621
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTAC
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|76288290|gb|DV027858.1|DV027858
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|211078718|gb|FL360383.1|FL360383
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|211414492|gb|FL334083.1|FL334083
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAAEST: gi|211381249|gb|FL356117.1|FL356117
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGA-
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATEST: gi|211467481|gb|FL327941.1|FL327941
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG GTTCGTGTGGGATGAGGGCAAGT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGT
tgtagctcaaaggctagcttgtttgtttgggtcgcgcgtgcctacctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG
cctacct CT-rich tract
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaggtctgccgctacctgtctggtggtttgttacccgcaacatgtgtgtagctcaaaggctagcttgtttgtttgggtcgcgcgtgcctacctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGATCGTCGGCAGCATCCAGTCGCAGGTCGCCAAGATCGAGGATGACATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
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