1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaaatcatgttggttcagattaggaatggagcatcaccgtagtcacttttagcttcctctttctaacttgcttatcaactgtggatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTATAGAAGCTCTAAATGGAACACACAAAATAGAG
species | Zea mays |
transcript | GRMZM2G177001_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAG CTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTAEST: gi|60400937|gb|DN233744.1|DN233744
genomic: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAGgtaaaatcat ... gatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTA
EST: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAG CTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTAEST: gi|149098711|gb|EE184722.2|EE184722
genomic: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAGgtaaaatcat ... gatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTA
EST: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAG CTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTAEST: gi|71438922|gb|DR819972.1|DR819972
genomic: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAGgtaaaatcat ... gatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTA
EST: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAG CTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTAEST: gi|211051931|gb|FL422541.1|FL422541
genomic: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAGgtaaaatcat ... gatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTA
EST: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAG CTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTAEST: gi|89761503|gb|DY689493.1|DY689493
genomic: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAGgtaaaatcat ... gatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTA
EST: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAG CTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTAEST: gi|60396221|gb|DN229090.1|DN229090
genomic: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAGgtaaaatcat ... gatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTA
EST: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAG CTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTAEST: gi|6020453|gb|AW065381.1|AW065381
genomic: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAGgtaaaatcat ... gatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTA
EST: ATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAG CTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTAEST: gi|6564129|gb|AW231751.1|AW231751
genomic: ATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAGgtaaaatcat ... gatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTA
EST: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAG CTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTA
genomic: AAATATAAAGGATTTACAGATTCTGAGAGGCTCTCAGCAAACGAGCAAAGgtaaaatcat ... gatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTA
gtagtcacttttagcttcctctttctaacttgcttatcaactgtggatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTATAGAAGCTCTAAATGGAACACACAAAATAGAG
ttctaac putative branch site (score: 52)
actttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatcatgttggttcagattaggaatggagcatcaccgtagtcacttttagcttcctctttctaacttgcttatcaactgtggatgttgcagCTGGTTGTGCCTTTCTAAAATATGAAACAAAAGAGCAAGCTGTGGCTGCTATAGAAGCTCTAAATGGAACACACAAAATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC