1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgaacagaattttccttggaactgtgtgacctttaatcaatctgcgtgagggcatggaacattttttttccctttcagtttacttaggcattttaaccttggtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTTACCTGAAAATAGAAGATTTGGCGAAGAAGTACCAGTGCAGCCCAGCTC
species | Zea mays |
transcript | GRMZM2G176903_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|211251481|gb|FL481726.1|FL481726
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGACACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|76283460|gb|DV023028.1|DV023028
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGGGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|60394069|gb|DN226939.1|DN226939
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGACACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|91052484|gb|EB162902.1|EB162902
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATTTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|67012842|gb|CO441591.1|CO441591
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGACACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|93011745|gb|EB637265.1|EB637265
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|149075226|gb|EE163727.2|EE163727
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|148968047|gb|EE019380.2|EE019380
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAEST: gi|71449217|gb|DR830267.1|DR830267
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAA
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCEST: gi|61119403|gb|DN560364.1|DN560364
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGC
EST: CAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|113844333|gb|DW954622.1|DW954622
genomic: CAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: CAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|44901166|gb|CK827711.1|CK827711
genomic: CAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGACACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|71763494|gb|DR961431.1|DR961431
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|71313076|gb|DR793065.1|DR793065
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|71305514|gb|DR788900.1|DR788900
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|71769570|gb|DR967507.1|DR967507
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTEST: gi|71313078|gb|DR793066.1|DR793066
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|91877438|gb|EB407395.1|EB407395
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|32834502|gb|CD974180.1|CD974180
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGACACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|93016813|gb|EB642333.1|EB642333
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTEST: gi|50324103|gb|CO519229.1|CO519229
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGEST: gi|211387055|gb|FL031624.1|FL031624
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAG
EST: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG CAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
genomic: TTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTGgtacgaacag ... gtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATT
gaacattttttttccctttcagtttacttaggcattttaaccttggtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTTACCTGAAAATAGAAGATTTGGCGAAGAAGTACCAGTGCAGCCCAGCTC
ttttaac putative branch site (score: 273)
tttcatc putative PPT
tttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgaacagaattttccttggaactgtgtgacctttaatcaatctgcgtgagggcatggaacattttttttccctttcagtttacttaggcattttaaccttggtttcatcagCAAAGGCATCCAAGATTTACAACAGAAAGCTTGGAGAAGAACAAGCAGATTTACCTGAAAATAGAAGATTTGGCGAAGAAGTACCAGTGCAGCCCAGCTC
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