1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgcgggccaggattatatagcttgtatgaccacattctccataatatagcttaccttttaaaatttatattcaaaattggacgtacagATAAATCAGCATATTTGTTCTGAGCAGGCATGCACGGTGGATCTACTGAGTTACAG
species | Zea mays |
transcript | GRMZM2G176506_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGCAAAGTCTTAAATGGGCCAGGCACTAGCTTGGAGGTTTTAGAGGAG ATAAATCAGCATATTTGTTTTGAGCAGGCATGCACGGTGGATCTATTGAGTEST: gi|60396027|gb|DN228897.1|DN228897
genomic: ACTGCAAAGTCTTAAATGGGCCAGGCACTAGCTTGGAGGTTTTAGAGGAGgtgcgggcca ... ggacgtacagATAAATCAGCATATTTGTTCTGAGCAGGCATGCACGGTGGATCTACTGAGT
EST: ACTGCAAAGTCTTAAATGGGCCAGGCACTAGCTTGGAGGTTTTAGAGGAG ATAAATCAGCATATTTGTTCTGAGCAGGCATGCACGGTGGATCTACTGAGT
genomic: ACTGCAAAGTCTTAAATGGGCCAGGCACTAGCTTGGAGGTTTTAGAGGAGgtgcgggcca ... ggacgtacagATAAATCAGCATATTTGTTCTGAGCAGGCATGCACGGTGGATCTACTGAGT
attctccataatatagcttaccttttaaaatttatattcaaaattggacgtacagATAAATCAGCATATTTGTTCTGAGCAGGCATGCACGGTGGATCTACTGAGTTACAG
agcttac putative branch site (score: 49)
ataatatagcttacct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgggccaggattatatagcttgtatgaccacattctccataatatagcttaccttttaaaatttatattcaaaattggacgtacagATAAATCAGCATATTTGTTCTGAGCAGGCATGCACGGTGGATCTACTGAGTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA