1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcgttgctgcgtgtttgtacttgtagctaccagctttatgaggttatgcaaggaacttgacagaagttttgttgcctctactttgtatcaggaaagATGGAAGTTCATTCTGTGATCATCTACATGTATCTCCTATCCGAGATGCTTCGGGCAAG
species | Zea mays |
transcript | GRMZM2G176506_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCATGCACGGTGGATCTACTGAGTTACAGGAAAGEST: gi|60399279|gb|DN232093.1|DN232093
genomic: GCATGCACGGTGGATCTACTGAGTTAC-----AGgtgcgttgct ... atcagg
EST: CAGCATATTTGTTCTGAGCAGGCATGCACGGTGGATCTACTGAGTTACAG ATGGAAGTTCATTCTGTGATCATCTACATGTATCTCCTATCCGAGATGCTT
genomic: CAGCATATTTGTTCTGAGCAGGCATGCACGGTGGATCTACTGAGTTACAGgtgcgttgct ... atcaggaaagATGGAAGTTCATTCTGTGATCATCTACATGTATCTCCTATCCGAGATGCTT
ggttatgcaaggaacttgacagaagttttgttgcctctactttgtatcaggaaagATGGAAGTTCATTCTGTGATCATCTACATGTATCTCCTATCCGAGATGCTTCGGGCAAG
acttgac putative branch site (score: 4)
aagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgttgctgcgtgtttgtacttgtagctaccagctttatgaggttatgcaaggaacttgacagaagttttgttgcctctactttgtatcaggaaagATGGAAGTTCATTCTGTGATCATCTACATGTATCTCCTATCCGAGATGCTTCGGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG