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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaccggaaaagcatagcgcaaatgaatgtttgacactgctctgttctgtaagcatagttgagtgcaaagcttgcctctgaaacatttactgatttgaagCATTTTGCAGATCAATACACAATCTGTTCAAGATATGCATATAGATGCTGATCCTTCACATGTTCCTGTTGTTCTTATAGAAAAACATGGCATGGTTGTT

Basic information

species Zea mays
transcript GRMZM2G176042_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176042_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g06800.1 (Oryza sativa), 3'ss of exon 9
acaccggaaaagcatagcgcaaatgaatgtttgacactgctctgttctgtaagcatagt-tgagtgcaaagcttgc---ctctgaaacatttactgatttgaagCATTTTGCAGATCAATACACAATCTGTTCAAGATATGCATATAGATGCTGATCCTTCACATGTTCCTGTTGTTCTTATAGAAAAACATGGCATGGTTGTT----------
                            ||| | |       | || || ||  |   | |||||| ||| ||||     |  ||| | ||||||||||| ||||||  |||||||||| || |  || |||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||| |||||| ||||||||||          
----------------------------gttcggcttgttatttttttggaataactttatgagtgaaaaacttgttaatttagaatcgtttactgatttaaagcatcctgcagATCAACACGCTGTCCGTTCAAGATATGCAAATATATGCAGATCCTTCACGTGTTCCTGTTGTTCTTATAGAACAACATGTCATGGTTGTTCCGCAACATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtaagcatagttgagtgcaaagcttgcctctgaaacatttactgatttgaagCATTTTGCAGATCAATACACAATCTGTTCAAGATATGCATATAGATGCTGATCCTTCACATGTTCCTGTTGTTCTTATAGAAAAACATGGCATGGTTGTT
                                          tactgat  putative branch site (score: 2)
                                   aaacattta  TA-rich tract