1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatgctttttattagttgaataggagtgggctggttgcttgaacttgcaccttcctgatctctgcatgaaaactattgattgatttgcttcgttcaatagGTTCATATGGAGAGGTTTACCGTGCTGACTGGAATGGAACC
species | Zea mays |
transcript | GRMZM2G175563_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGCGAAATTCCTTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAG GTTCATATGGAGAGGTTTACCGTGCTGACTGGAAT
genomic: GTGCGAAATTCCTTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGgtacttattt ... cgttcaatagGTTCATATGGAGAGGTTTACCGTGCTGACTGGAAT
tgcaccttcctgatctctgcatgaaaactattgattgatttgcttcgttcaatagGTTCATATGGAGAGGTTTACCGTGCTGACTGGAATGGAACC
tttgcttc CT-rich tract
aaaactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgctttttattagttgaataggagtgggctggttgcttgaacttgcaccttcctgatctctgcatgaaaactattgattgatttgcttcgttcaatagGTTCATATGGAGAGGTTTACCGTGCTGACTGGAATGGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
tatgctt
- - - - - - - - - - - - - tgggctg
- - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgctt