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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgctatttttgtttacaatagctagaatatttatctttcagtgagctgattattctttcttgtctgctttagATGTATGTGACAAGTTGGTGGAGTCTCTGTGCAGCAAGCGCAAGGACCACCCTGCATATAGTTTTTTGTCAGCAACTGAATCATCTTCATTGAAAAATGA

Basic information

species Zea mays
transcript GRMZM2G175453_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G175453_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g05990.1 (Oryza sativa), 3'ss of exon 3
-------------------------gtaagatgctatttttgtttaca----atagctagaatatttatctttcagtgagctgattattctttcttgtctgctttagATGTATGTGACAAGTTGGTGGAGTCTCTGTGCAGCAAGCGCAAGGACCACCCTGCATATAGTTTTTTGTCAGCAACTGAATCATCTTCATTGAAAAATGA
                          |   || |||  | |    | |    |||  | |||  || |   |    |||||||||| |||||| |  | |||| |||| || || || ||| ||||||| |||||||||||||| ||||||||||||| |||||||| ||  ||  |||||| |||| ||||  |||| |  |||||
gtatgaagtttgactttatttttttattgcattctagatcttcagagattttatattttgaagtttgagactatgttgagctgatttttctttgtcatatgctatagACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACCTTGCATATAATTCATTTCCAGCAAGTGAACCATCCGCATTCAGCAATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149097573|gb|EE183461.2|EE183461
EST:     TTTTGTAAAGCAATCTGTACCACTATTCGACCAACTTGGTATAAAAAGAG                         ATGTATGTGACAAGTTGGTGGAGTCTCTGTGCAGCAAGCGCAAGGACCACC
genomic: TTTTGTAAAGCAATCTGTACCACTATTCGACCAACTTGGTATAAAAAGAGgtaagatgct ... tctgctttagATGTATGTGACAAGTTGGTGGAGTCTCTGTGCAGCAAGCGCAAGGACCACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagctagaatatttatctttcagtgagctgattattctttcttgtctgctttagATGTATGTGACAAGTTGGTGGAGTCTCTGTGCAGCAAGCGCAAGGACCACCCTGCATATAGTTTTTTGTCAGCAACTGAATCATCTTCATTGAAAAATGA
                          agctgat  putative branch site (score: 4)
                                ttattctttcttgtct  CT-rich tract
     tagaatatttatcttt  TA-rich tract