Sequence
atgc intronic sequence ATGC exonic sequencegtatgtgtactttactgccctcagttcaattctgcaactgttacctatataatggtggcttgctcatattatagaaattgaaaaaaacatttgttttaattgtggcattctttattgtgacccttggttaattgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCAGGGACGTCGATGGAAGCCGCATTATTGTTGAATTTGCTAAAGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G175419_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA19G35980.4 (Glycine max), 3'ss of exon 3
---------------------gtatgtgtactttactgccctcagttcaattctgcaactgttacctatataatggtggcttgctcatattat-agaaattgaaaaaaacatt-tgttttaattgtggcattctttattgtgacccttggtta--attgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCAGGGACGTCGATGGAAGCCGCATTATTGTTGAATTTGCTAAAGGG
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gtaagttgtcaccctttctttgtctatttattgatttcttttgatttcaatttcttatgtatttgcttaaaagtggcttctagtatttgctttgaggaattcagttgtagatgatggaatgatttctgtgttactttcttggcttgttcgttacaacttttgggcagGATTTTAGTGATCCTCGAGATGCTGATGATGCAAGATATAACCTGGATGGTCGGGATGTTGATGGAAGTCGGATTATTGTGGAATTTGCAAAAGGG
upper sequence: GRMZM2G175419_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv08s0040g02860.t01 (Vitis vinifera), 3'ss of exon 1
-----------gtatgtgtactttactgccctcagttcaattctgcaactgttacctatataatggtggcttgctcatat---tatagaaattgaaaaaaacat----ttgttttaattgtggcattctttattgtgaccct-tggttaattgcaaa-acagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCAGGGACGTCGATGGAAGCCGCATTATTGTTGAATTTGCTAAAGGG
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gtatgtatcaaccatttgttcatctatttctttcctttttctcccttgcttatggttatggagtatttttctccttatttatctatagaagtcacattatagatggtgttacacaaatatgagcatcccgttgttcgttcttgcacttaattttatctacagGAATTCAGTGATCCCCGAGATGCTGATGATGCAAGATATAACTTAAATGGACGAGATTTTGATGGAAGTCGTATCATTGTGGAATTTGCGAAAGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18660552|gb|BM500923.1|BM500923EST: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT GAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGC
genomic: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTgtatgtgtac ... tgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catttgttttaattgtggcattctttattgtgacccttggttaattgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCAGGGACGTCGATGGAAGCCGCATTATTGTTGAATTTGCTAAAGGG
ttttaattgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtgtactttactgccctcagttcaattctgcaactgttacctatataatggtggcttgctcatattatagaaattgaaaaaaacatttgttttaattgtggcattctttattgtgacccttggttaattgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCAGGGACGTCGATGGAAGCCGCATTATTGTTGAATTTGCTAAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG