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gtaagccactgaaaatataataactagaactaagtttgcatatcttgaaaaaaataggtatttacttaacacatattcaaccttggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG
species | Zea mays |
transcript | GRMZM2G174830_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTTGTGGTGATTCTEST: gi|71433192|gb|DR814242.1|DR814242
genomic: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
EST: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCTEST: gi|211353516|gb|FL063245.1|FL063245
genomic: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
EST: TTGGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT CATGCAGCAGCCATTGEST: gi|78114801|gb|DV533189.1|DV533189
genomic: TTGG-ACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTG
EST: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCTEST: gi|211351122|gb|FL063243.1|FL063243
genomic: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
EST: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTTGGTGGTGATEST: gi|74242321|gb|DT650235.1|DT650235
genomic: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTT-GGTGGTGAT
EST: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTAT CATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
genomic: ATTGGACTGTGCTGTCCACAGAGGGAGACAAACCTATTCCTCGTTTCTATgtaagccact ... ggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCT
atatcttgaaaaaaataggtatttacttaacacatattcaaccttggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG
acttaac putative branch site (score: 81)
aaaaaaataggtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccactgaaaatataataactagaactaagtttgcatatcttgaaaaaaataggtatttacttaacacatattcaaccttggtcaaacagCATGCAGCAGCCATTGTAAGTAGCAAGATGGTAGTGTTTGGTGGTGATTCTGGTAATCGCTTATTAGATGACACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG