1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttggtgatatgaatgtcattgcagatatcttgaatggagacagctttgtcaacaaattttgctaattatgcatacccttattttgtcagGTAAGCCATCATCCCCCAATGGGTGTTGCTCACTGCGAGAATGAACATTTTACTTACGATATCACGTCTAAGTTGAAGACCAAGTTTTTGGGAAATTCAG
species | Zea mays |
transcript | GRMZM2G174644_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGACTTATGAGATGGTTAACCACCAGGGCATTACATTTCTTGCTGAGCAG GTAAGCCATCATCCCCCAATGGGTGTTGCTCACTGCGAGAATGAACATTTTEST: gi|149009147|gb|EE041283.2|EE041283
genomic: AGACTTATGAGATGGTTAACCACCAGGGCATTACATTTCTTGCTGAGCAGgttggtgata ... attttgtcagGTAAGCCATCATCCCCCAATGGGTGTTGCTCACTGCGAGAATGAACATTTT
EST: AGACTTATGAGATGGTTAACCACCAGGGCATTACATTTCTTGCTGAGCAG GTAAGCCATCATCCCCCAATGGGTGTTGCTCACTGCGAGAATGAACATTTTEST: gi|5499280|gb|AI855147.1|AI855147
genomic: AGACTTATGAGATGGTTAACCACCAGGGCATTACATTTCTTGCTGAGCAGgttggtgata ... attttgtcagGTAAGCCATCATCCCCCAATGGGTGTTGCTCACTGCGAGAATGAACATTTT
EST: CAGGGCATTACATTTCTTGCTGAGCAG GTAAGCCATCATCCCCCAATGGGTGTTGCTCACTGCGAGAATGAACATTTT
genomic: CAGGGCATTACATTTCTTGCTGAGCAGgttggtgata ... attttgtcagGTAAGCCATCATCCCCCAATGGGTGTTGCTCACTGCGAGAATGAACATTTT
tggagacagctttgtcaacaaattttgctaattatgcatacccttattttgtcagGTAAGCCATCATCCCCCAATGGGTGTTGCTCACTGCGAGAATGAACATTTTACTTACGATATCACGTCTAAGTTGAAGACCAAGTTTTTGGGAAATTCAG
tgctaat putative branch site (score: 340)
cccttatttt putative PPT
aaattttgctaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgatatgaatgtcattgcagatatcttgaatggagacagctttgtcaacaaattttgctaattatgcatacccttattttgtcagGTAAGCCATCATCCCCCAATGGGTGTTGCTCACTGCGAGAATGAACATTTTACTTACGATATCACGTCTAAGTTGAAGACCAAGTTTTTGGGAAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA