1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catatacaatataatataacttctggcattggtttggtgtatgctgagttcatggcaacaattttgatgagtaactaatagctgactctttttcttgcagATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTGAAGTACAACATTGGTCGTGTTGATGCTGAAGATCAATTAGAAGGGGCTG
species | Zea mays |
transcript | GRMZM2G174572_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGACATGAGAGCTCAATATCTACGGAGCAAGGGTATATTAGTTTGGAAG ATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTGEST: gi|87155847|gb|DY400636.1|DY400636
genomic: TTGACATGAGAGCTCAATATCTACGGAGCAAGGGTATATTAGTTTGGAAGgtaaaatgtt ... tttcttgcagATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTG
EST: GAGCAAGGGTATATTAGTTTGGAAG ATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTGEST: gi|78087366|gb|DV515759.1|DV515759
genomic: GAGCAAGGGTATATTAGTTTGGAAGgtaaaatgtt ... tttcttgcagATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTG
EST: AGCAAGGGTATATTAGTTTGGAAG ATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTGEST: gi|71441488|gb|DR822538.1|DR822538
genomic: AGCAAGGGTATATTAGTTTGGAAGgtaaaatgtt ... tttcttgcagATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTG
EST: TTGACATGAGAGCTCAATATCTACGGAGCAAGGGTATATTAGTTTGGAAG ATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTGEST: gi|78084113|gb|DV512506.1|DV512506
genomic: TTGACATGAGAGCTCAATATCTACGGAGCAAGGGTATATTAGTTTGGAAGgtaaaatgtt ... tttcttgcagATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTG
EST: TTGACATGAGAGCTCAATATCTACGGAGCAAGGGTATATTAGTTTGGAAG ATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTGEST: gi|21987403|gb|BQ778931.1|BQ778931
genomic: TTGACATGAGAGCTCAATATCTACGGAGCAAGGGTATATTAGTTTGGAAGgtaaaatgtt ... tttcttgcagATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTG
EST: GAGCAAGGGTATATTAGTTTGCAAT ATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTGEST: gi|24763976|gb|CA399146.1|CA399146
genomic: GAGCAAGGGTATATTAGTTTGGAAGgtaaaatgtt ... tttcttgcagATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTG
EST: TTGACATGAGAGCTCAATATCTACGGAGCAAGGGTATATTAGTTTGGAAG ATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTGEST: gi|87156391|gb|DY401180.1|DY401180
genomic: TTGACATGAGAGCTCAATATCTACGGAGCAAGGGTATATTAGTTTGGAAGgtaaaatgtt ... tttcttgcagATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTG
EST: TTGACATGAGAGCTCAATATCTACGGAGCAAGGGTATATTAGTTTGGAAG ATGGAATA-TCAAGGATCGGCAAGGCGAGGGCTGCATTT
genomic: TTGACATGAGAGCTCAATATCTACGGAGCAAGGGTATATTAGTTTGGAAGgtaaaatgtt ... tttcttgcagATGGA-TAATCGAGGATCGGCAAGGCGAGGGCTGCATTT
gagttcatggcaacaattttgatgagtaactaatagctgactctttttcttgcagATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTGAAGTACAACATTGGTCGTGTTGATGCTGAAGATCAATTAGAAGGGGCTG
ctgactctttttctt CT-rich tract
aacaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatacaatataatataacttctggcattggtttggtgtatgctgagttcatggcaacaattttgatgagtaactaatagctgactctttttcttgcagATGGATAATCGAGGATCGGCAAGGCGAGGGCTGCATTTTGAGGGACAACTGAAGTACAACATTGGTCGTGTTGATGCTGAAGATCAATTAGAAGGGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - -cttctgg
- - - - - - - - - - - - - - - - - - -tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - -gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatg