1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atataatattttccctgatagtaaatgttgcacttgctcgcagtcgtatacctgggcactggacattggtcttactactttggttttcctatttttgtagATCCATACTTGAACACAGATGCAAGTACAATGTCCCCCTTTGAGCATGGTGAGGTGTCTGTTCTTGATAACGGTGGATAGGTACAGCTCCCTAATACTTC
species | Zea mays |
transcript | GRMZM2G174489_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAACTTCAGGAGCTTCGGTCTATAAGAGTTCAAAAAATGAAGAAACAAG ATCCATACTTGAACACAGATGCAAGTACAATGTCCCCCTTTGAGCATGGTGEST: gi|71761888|gb|DR959825.1|DR959825
genomic: GAAACTTCAGGAGCTTCGGTCTATAAGAGTTCAAAAAATGAAGAAACAAGgtaaaatatt ... atttttgtagATCCATACTTGAACACAGATGCAAGTACAATGTCCCCCTTTGAGCATGGTG
EST: GAAACTTCAGGAGCTTCGGTCTATAAGAGTTCAAAAAATGAAGAAACAAG ATCCATACTTGAACACAGATGCAAGTACAATGTCCCCCTTTGAGCATGGTG
genomic: GAAACTTCAGGAGCTTCGGTCTATAAGAGTTCAAAAAATGAAGAAACAAGgtaaaatatt ... atttttgtagATCCATACTTGAACACAGATGCAAGTACAATGTCCCCCTTTGAGCATGGTG
gtatacctgggcactggacattggtcttactactttggttttcctatttttgtagATCCATACTTGAACACAGATGCAAGTACAATGTCCCCCTTTGAGCATGGTGAGGTGTCTGTTCTTGATAACGGTGGATAGGTACAGCTCCCTAATACTTC
gtcttac putative branch site (score: 8)
ttttcctatttttgt putative PPT
tatttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atataatattttccctgatagtaaatgttgcacttgctcgcagtcgtatacctgggcactggacattggtcttactactttggttttcctatttttgtagATCCATACTTGAACACAGATGCAAGTACAATGTCCCCCTTTGAGCATGGTGAGGTGTCTGTTCTTGATAACGGTGGATAGGTACAGCTCCCTAATACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - ttccctg
- - - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - tgctcgc
- - - - - - - - - - - - - - - - - - - - - - - - tacctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcactgg