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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggagtgccagttttattattggtaaactctttgttctggaggaccaatttatttataaaaaaagaggttctgacttgcattttgttgtatgtgaaagtagGTTCAGGGTCAAAAGTACGATCCGGACGGTGAATATGTAAGAACTTGGATTCCTGAACTTGCTAGAATGCCAACAGAATGGATCCATAGTCCATGGGCTG

Basic information

species Zea mays
transcript GRMZM2G172152_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G172152_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g41550.1 (Oryza sativa), 3'ss of exon 4
ggagtgccagttttattattggtaaactctttgttctggaggaccaatttatt-tataaaaaaag---aggttctgacttgcattttgttgtatgtgaaagtagGTTCAGGGTCAAAAGTACGATCCGGACGGTGAATATGTAAGAACTTGGATTCCTGAACTTGCTAGAATGCCAACAGAATGGATCCATAGTCCATGGGCTG
   |||  |   ||||| |  ||    |||  || |     |    ||  ||   ||  || |     | |||      |     || ||  |||  ||| |||||||| ||||||||||| || || || |||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||  |||||||| ||
-ttgtgttatacttattttatgtg---tctaagtaccaagtgttttatccatgacatgcaagatatttatgtttccctatttggcttttttgatgcaaaactagGTTCAAGGTCAAAAGTATGACCCAGATGGTGTATATGTAAGAACTTGGATACCTGAACTAGCTAGAATGCCGACAGAATGGATTCATCATCCATGGGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttatttataaaaaaagaggttctgacttgcattttgttgtatgtgaaagtagGTTCAGGGTCAAAAGTACGATCCGGACGGTGAATATGTAAGAACTTGGATTCCTGAACTTGCTAGAATGCCAACAGAATGGATCCATAGTCCATGGGCTG
                      ttctgac  putative branch site (score: 2)
     atttataaaaaaaga  TA-rich tract