1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaatgtctgtcatttcctgttgccatccagcctgaattcttgctgataacattgtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAGAGCGGTGATGACGATGAGGATGAGGAGGCAGACGAGCACAACAATA
species | Zea mays |
transcript | GRMZM2G172001_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG CAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAEST: gi|211166632|gb|FK973167.1|FK973167
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... gtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAA
EST: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG CAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAEST: gi|60352400|gb|DN219373.1|DN219373
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... gtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAA
EST: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGT- --GTCAAGAGCAGAGTCTCGTTCAAAGGTTAAGGTCCCCCAAGACGAAGAAEST: gi|78023803|gb|DV492190.1|DV492190
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... gtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAA
EST: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCNTAGTTCAAAAGTG CAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAEST: gi|149042112|gb|EE047090.2|EE047090
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... gtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAA
EST: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG CAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAEST: gi|60397867|gb|DN230683.1|DN230683
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... gtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAA
EST: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGT- --GTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAEST: gi|71756745|gb|DR954682.1|DR954682
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... gtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAA
EST: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGT- --GTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAEST: gi|5456317|gb|AI834007.1|AI834007
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... gtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAA
EST: AGAAGNCNCCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG CAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAEST: gi|78110539|gb|DV528949.1|DV528949
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... gtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAA
EST: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTG CAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAA
genomic: AGAAGACACCTAATAGTAGCAGCAAGAGCAACAGGCCTAGTTCAAAAGTGgtaaatgtct ... gtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAA
gtcatttcctgttgccatccagcctgaattcttgctgataacattgtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAGAGCGGTGATGACGATGAGGATGAGGAGGCAGACGAGCACAACAATA
tgataac putative branch site (score: 45)
ataacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgtctgtcatttcctgttgccatccagcctgaattcttgctgataacattgtgtctgcagCAGTCAAGAGCAGAGTCTCGTTCAAAGGCTAAGGTCCCCCAAGACGAAGAAGAGAGCGGTGATGACGATGAGGATGAGGAGGCAGACGAGCACAACAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG