1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttcttaaacatttctggactgctaacagtgctcttgctgctaatgcaagcaaatatagcttgtgaactgactccaatgttttctcttcttttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTGGATCTTCCATGGAGTGATCTATCAACTTAAGCGGGAAAATTGATTCAG
species | Zea mays |
transcript | GRMZM2G171484_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|60339885|gb|DN206858.1|DN206858
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|67035082|gb|CO463615.1|CO463615
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|17932184|gb|BM269144.1|BM269144
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|28930975|gb|CB334336.1|CB334336
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|28873901|gb|CB329830.1|CB329830
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|211023430|gb|FL440278.1|FL440278
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTTGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|76011993|gb|DT939163.1|DT939163
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|76921190|gb|DV168486.1|DV168486
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|14203665|gb|BG837342.1|BG837342
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTC-TGCGGATTTCCAGCCATRTTTTAGG GGTAGCAGACCTGGCTTTGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|5928876|gb|AW056168.1|AW056168
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|37374445|gb|CF623580.1|CF623580
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|166522729|gb|EG304475.1|EG304475
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|113772208|gb|DW892682.1|DW892682
genomic: TGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: GGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGNGCCAGTEST: gi|113769979|gb|DW888173.1|DW888173
genomic: GGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: GAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|67030453|gb|CO459202.1|CO459202
genomic: GAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|40303243|gb|CK347630.1|CK347630
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|67017230|gb|CO445979.1|CO445979
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|14243837|gb|BG841533.2|BG841533
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|31353380|gb|CD437737.1|CD437737
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTTGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|211053110|gb|FL123926.1|FL123926
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGGAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTT-AGG GGTAGCAGACCTGGCTTTGGGCGTGGTGGCGGCAGCGCTTTTGGTGCEST: gi|29130033|gb|CB380737.1|CB380737
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGC
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|211056051|gb|FL123938.1|FL123938
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|30087411|gb|CB885617.1|CB885617
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTATGGTGCCAGTEST: gi|37381614|gb|CF627703.1|CF627703
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGTCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|31355636|gb|CD439993.1|CD439993
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTTGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|211023429|gb|FL440277.1|FL440277
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTTGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|30087412|gb|CB885618.1|CB885618
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|76011994|gb|DT939164.1|DT939164
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|60338236|gb|DN205209.1|DN205209
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|31356366|gb|CD440723.1|CD440723
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTTGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTEST: gi|166685770|gb|EG157787.1|EG157787
genomic: TTGGTGGTGAGAAGGGTAGTGCTCCTGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
EST: TGCGGATTTCCAGCCATCTTTTAGG GGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
genomic: TGCGGATTTCCAGCCATCTTTTAGGgtaagttcta ... tttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGT
gcaagcaaatatagcttgtgaactgactccaatgttttctcttcttttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTGGATCTTCCATGGAGTGATCTATCAACTTAAGCGGGAAAATTGATTCAG
aactgac putative branch site (score: 71)
ctccaatgttttctct CT-rich tract
ttctttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttaaacatttctggactgctaacagtgctcttgctgctaatgcaagcaaatatagcttgtgaactgactccaatgttttctcttcttttttttcagGGTAGCAGACCTGGCTTCGGCCGTGGTGGCGGCAGCGCTTTTGGTGCCAGTGGATCTTCCATGGAGTGATCTATCAACTTAAGCGGGAAAATTGATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - -gactgct
- - - - - - - - - - - - - - -tgctctt
- - - - - - - - - - - - - - - - - - gctgcta
- - - - - - - - - - - - - - - - - - - - - - tgcaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaactg