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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggtttcagttcaacagttttttgacatggttctgtgaatgctgctgtgctcattgttgtatgctgatgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAATGGAATGATATATGTCATTCAG

Basic information

species Zea mays
transcript GRMZM2G171469_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171469_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g02850.2 (Oryza sativa), 3'ss of exon 4
gttaggtttcagttcaacagttttttgacatggttctgtgaatgctgctgtgctcattgttgtatgctgatgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAATGGAATGATATATGTCATTCAG
||||| ||| | ||  | | | |||||   | || |  ||  || |  ||| ||||||| |  ||| ||   |||| |||||||| ||| |||| |||||||||||| | |||||||| || |||||||||||| || | ||||  || |||
gttag-ttttacttggata-tattttggttttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttagGCACGGGCAATGTCTACTGATGGGCTCAGACCAGCTTTTTATACAATCAATGGAGTGGTCTATGCAATCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211280348|gb|FL373309.1|FL373309
EST:     CACGACCTAMGCTCTGCTAGTGCTTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGA
genomic: CACGACCTACGCTCTGCTAGTGCT-CTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGA
EST: gi|78108686|gb|DV527104.1|DV527104
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
EST: gi|32870547|gb|CF010229.1|CF010229
EST:     TCACGACCTACTCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCG
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCG
EST: gi|149017006|gb|EE045660.2|EE045660
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
EST: gi|211330706|gb|FL425856.1|FL425856
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATG
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATG
EST: gi|91873273|gb|EB403230.1|EB403230
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
EST: gi|78108178|gb|DV526596.1|DV526596
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
EST: gi|71322323|gb|DR797838.1|DR797838
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
EST: gi|74237785|gb|DT645699.1|DT645699
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
EST: gi|50339374|gb|CO534500.1|CO534500
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
EST: gi|76018861|gb|DT946031.1|DT946031
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
EST: gi|5895618|gb|AW036864.1|AW036864
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTATACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
EST: gi|211461108|gb|FL380552.1|FL380552
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGA
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGA
EST: gi|50333507|gb|CO528633.1|CO528633
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
EST: gi|71770532|gb|DR968469.1|DR968469
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
EST: gi|149075806|gb|EE164341.2|EE164341
EST:     TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG                         GCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT
genomic: TCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttaggtttc ... tgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacatggttctgtgaatgctgctgtgctcattgttgtatgctgatgtttgctagGCACGTGCAGTGTCGACTGATGGGCTCCGGCCAGCTTTCTACACAATCAATGGAATGATATATGTCATTCAG
                                       tgctgat  putative branch site (score: 3)