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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttcccacaaatctgagaccatgattgtatcatagtcatcattatttccatatctctatttccttgtgatttctctgagccacttcacatttgttccagCGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACTGGAATTGTTTCCTAAAAATTTGAGCGCTATTGCTCATTTG

Basic information

species Zea mays
transcript GRMZM2G169914_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169914_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g19460.1 (Oryza sativa), 3'ss of exon 4
--gtttcccacaa-atctgagaccatgat-tgtatcatagtcatcattatttccatatctctatttccttgtgatttctctgagccacttcacatttgttccagCGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACTGGAATTGTTTCCTAAAAATTTGAGCGCTATTGCTCATTTG
   ||  ||| |  ||| |||  |    | | |||||| ||  |    | |    | |  ||  |   || ||| |   |  | | | ||   |  |    ||| ||||||||||| ||| | ||||| ||||||||| | ||||||||||| || ||| |||||||| |||||||||| ||| | |||||||||
tacttgaccagattatccgagttctcattatttatcattgtt-ttgcaactattgttttgcttatgtgttttgactagccaaatctattttttaccta---cagGGCTTCTGCAATCTTTATAGGAGTGTATGAACCAACCAAAAGAAAACTGCTAGAAATGTTTCCTGAAAATTTGAGTGCTGTGGCTCATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211410757|gb|FL164832.1|FL164832
EST:     TGGAAAGGCATGTATGATGGGTTAGCTGGAAATATTGTCGGTGTTCTTCC                         CGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAA-CTACT
genomic: TGGAAAGGCATGTATGATGGGTTAGCTGGAAATATTGTCGGTGTTCTTCCgtgagtatta ... tttgttccagCGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACT
EST: gi|211312002|gb|FL324783.1|FL324783
EST:     TGGAAAGGCATGTATGATGGGTTAGCTGGAAATATTGTCGGTGTTCTTCC                         CGSTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACT
genomic: TGGAAAGGCATGTATGATGGGTTAGCTGGAAATATTGTCGGTGTTCTTCCgtgagtatta ... tttgttccagCGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACT
EST: gi|88752899|gb|DY537040.1|DY537040
EST:     TGGAAAGGCATGTATGATGGGTTAGCTGGAAATATTGTCGGTGTTCTTCC                         CGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACT
genomic: TGGAAAGGCATGTATGATGGGTTAGCTGGAAATATTGTCGGTGTTCTTCCgtgagtatta ... tttgttccagCGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccatatctctatttccttgtgatttctctgagccacttcacatttgttccagCGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACTGGAATTGTTTCCTAAAAATTTGAGCGCTATTGCTCATTTG
                                             tttgttcc  CT-rich tract
          tctattt  TA-rich tract