1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcatttagtttttcaccttggaaagttctgtctcatttctatcatcaatacgttatatatgctgaaggcacttgttttccttttacatgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
species | Zea mays |
transcript | GRMZM2G169516_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGEST: gi|71430054|gb|DR811104.1|DR811104
genomic: GTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
EST: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGEST: gi|71438048|gb|DR819098.1|DR819098
genomic: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
EST: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGEST: gi|148972168|gb|EE023038.2|EE023038
genomic: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
EST: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGEST: gi|149026795|gb|EE046156.2|EE046156
genomic: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
EST: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGEST: gi|71324172|gb|DR798789.1|DR798789
genomic: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
EST: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGEST: gi|24765189|gb|CA400348.1|CA400348
genomic: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
EST: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGEST: gi|71442934|gb|DR823984.1|DR823984
genomic: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
EST: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGEST: gi|76926401|gb|DV170844.1|DV170844
genomic: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
EST: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGTGCEST: gi|148950313|gb|EC895872.2|EC895872
genomic: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGTGC
EST: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTEST: gi|71433348|gb|DR814398.1|DR814398
genomic: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCT
EST: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCTAGEST: gi|71431465|gb|DR812515.1|DR812515
genomic: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
EST: CAGATGAAAAGTACTTTCAG GGAAGTTTTTACAAC-TGGAGGGCTATACGCAATGCTGGAGTCCAGEST: gi|71318677|gb|DR796095.1|DR796095
genomic: CAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGA-GGCTATACGCAATGCTGGAGTCCAG
EST: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAG GGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
genomic: AAAACGGAGCAGCATGCCTTAGTGTTCTTACAGATGAAAAGTACTTTCAGgtcatttagt ... atgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
tcatcaatacgttatatatgctgaaggcacttgttttccttttacatgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
ttttccttttacat CT-rich tract
aatacgttatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatttagtttttcaccttggaaagttctgtctcatttctatcatcaatacgttatatatgctgaaggcacttgttttccttttacatgtaatcagGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA