1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atctgtagttgcctatgtggttttttacctgttgtaattgattattgtagctgcctaaggaatacatcgcctgttgtaaccgatttctattccctatcagGAAGGTGATCCCCGCCTGTCAAGTTTTGGATTAATGAAGAACAGCCGTGATGGAAAAAGCTATAGTACTAACCTGGCTTACACTCCACCAGAGTTTCTAC
species | Zea mays |
transcript | GRMZM2G169080_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAGGAAAATCTATCATGATTTGAATGCTTATAGAGTACTTTTTGATGAG GAAGGTGATCCCCGCCTGTCAAGTTTTGGATTAATGAAGAACAGCCGTGATEST: gi|71437024|gb|DR818074.1|DR818074
genomic: ACAGGAAAATCTATCATGATTTGAATGCTTATAGAGTACTTTTTGATGAGgtacacaaca ... tccctatcagGAAGGTGATCCCCGCCTGTCAAGTTTTGGATTAATGAAGAACAGCCGTGAT
EST: ACAGGAAAATCTATCATGATTTGAATGCTTATAGAGTACTTTTTGATGAG GAAGGTGATCCCCGCCTGTCAAGTTTTGGATTAATGAAGAACAGCCGTGATEST: gi|50336036|gb|CO531162.1|CO531162
genomic: ACAGGAAAATCTATCATGATTTGAATGCTTATAGAGTACTTTTTGATGAGgtacacaaca ... tccctatcagGAAGGTGATCCCCGCCTGTCAAGTTTTGGATTAATGAAGAACAGCCGTGAT
EST: ACAGGAAAATCTATCATGATTTGAATGCTTATAGAGTACTTTTTGATGAG GAAGGTGATCCCCGCCTGTCAAGTTTTGGATTAATGAAGAACAGCCGTGAT
genomic: ACAGGAAAATCTATCATGATTTGAATGCTTATAGAGTACTTTTTGATGAGgtacacaaca ... tccctatcagGAAGGTGATCCCCGCCTGTCAAGTTTTGGATTAATGAAGAACAGCCGTGAT
tgtagctgcctaaggaatacatcgcctgttgtaaccgatttctattccctatcagGAAGGTGATCCCCGCCTGTCAAGTTTTGGATTAATGAAGAACAGCCGTGATGGAAAAAGCTATAGTACTAACCTGGCTTACACTCCACCAGAGTTTCTAC
ttgtaac putative branch site (score: 36)
tttctattccctatc putative PPT
atttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgtagttgcctatgtggttttttacctgttgtaattgattattgtagctgcctaaggaatacatcgcctgttgtaaccgatttctattccctatcagGAAGGTGATCCCCGCCTGTCAAGTTTTGGATTAATGAAGAACAGCCGTGATGGAAAAAGCTATAGTACTAACCTGGCTTACACTCCACCAGAGTTTCTAC
- - - - - - ctatgtg
- - - - - - - - - - - - - -cctgttg
- - - - - - - - - - - - - - - - - - - - - - - - agctgcc