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gtgaaaggcatagtgcttggtcaatattaataaaaaatgcaattagatttccaaaataaagagtcctttttacttctattttgtgttacaatttcaatacttatagccttactaaaattatctgaatgccagGATTACGGGTACCTGGAGATCAGAGGCATCCACAATCTCTTCCTATCCATCTGATAGAAGTGCTTCCTTTAGGAGACGGTGCACAAAATTTTGGTGATAG
species | Zea mays |
transcript | GRMZM2G168913_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATACAGGAGCAGGAGGGCCTACTTAGAGCAGCAGTAAATTATGGTGAAG GATTACGGGTACCTGGAGATCAGAGGCATCCACAATCTCTTCCTATCCATCEST: gi|76287277|gb|DV026845.1|DV026845
genomic: GATACAGGAGCAGGAAGGCCTACTTAGAGCAGCAGTAAATTATGGTGAAGgtgaaaggca ... tgaatgccagGATTACGGGTACCTGGAGATCAGAGGCATCCACAATCTCTTCCTATCCATC
EST: GATACAGGAGCAGGAAGGCCTACTTAGAGCAGCAGTAAATTATGGTGAAG GATTACGGGTACCTGGAGATCAGAGGCATCCACAATCTCTTCCTATCCATCEST: gi|60291869|gb|DN190108.1|DN190108
genomic: GATACAGGAGCAGGAAGGCCTACTTAGAGCAGCAGTAAATTATGGTGAAGgtgaaaggca ... tgaatgccagGATTACGGGTACCTGGAGATCAGAGGCATCCACAATCTCTTCCTATCCATC
EST: GATACAGGAGCAGGAAGGCCTACTTAGAGCAGCAGTAAATTATGGTGAAG GATTACGGGTACCTGGAGATCAGAGGCATCCACAATCTCTTCCTATCCATCEST: gi|148965419|gb|EE016220.2|EE016220
genomic: GATACAGGAGCAGGAAGGCCTACTTAGAGCAGCAGTAAATTATGGTGAAGgtgaaaggca ... tgaatgccagGATTACGGGTACCTGGAGATCAGAGGCATCCACAATCTCTTCCTATCCATC
EST: GATACAGGAGCAGGAAGGCCTACTTAGAGCAGCAGTAAATTATGGTGAAG GATTACGGGTACCTGGAGATCAGAGGCATCCACAATCTCTTCCTATCCATC
genomic: GATACAGGAGCAGGAAGGCCTACTTAGAGCAGCAGTAAATTATGGTGAAGgtgaaaggca ... tgaatgccagGATTACGGGTACCTGGAGATCAGAGGCATCCACAATCTCTTCCTATCCATC
attttgtgttacaatttcaatacttatagccttactaaaattatctgaatgccagGATTACGGGTACCTGGAGATCAGAGGCATCCACAATCTCTTCCTATCCATCTGATAGAAGTGCTTCCTTTAGGAGACGGTGCACAAAATTTTGGTGATAG
tactaaa putative branch site (score: 60)
aatttcaatacttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaggcatagtgcttggtcaatattaataaaaaatgcaattagatttccaaaataaagagtcctttttacttctattttgtgttacaatttcaatacttatagccttactaaaattatctgaatgccagGATTACGGGTACCTGGAGATCAGAGGCATCCACAATCTCTTCCTATCCATCTGATAGAAGTGCTTCCTTTAGGAGACGGTGCACAAAATTTTGGTGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA