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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcacttcttacttgctgtatcattttatttatttgacatcttgcctgatgcatctttaaaactacacttgactgattcatgcagCTAAAAACCGCAAAGGCTCCTGCATTCCCAGTAGCCCAGCAAGTACCTGTGAGTAAGACTTCTCACCCTACAACAGAGTCAAACCAAACCCAGCATTCAG

Basic information

species Zea mays
transcript GRMZM2G167932_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351085|gb|CD435442.1|CD435442
EST:     ACGTGGATGAGCCTGTTTGTGAACCAGTAAAGAAGACTTATGCTTCCATC                         CTAAAAACCGCAAAGGCTCCTCCTGCATTCCCAGTAGCCCAGCAAGTACCT
genomic: ACGTGGATGAGCCTGTTTGTGAACCAGTAAAGAAGACTTATGCTTCCATCgtatgtcact ... attcatgcagCTAAAAACCGCAAAGG---CTCCTGCATTCCCAGTAGCCCAGCAAGTACCT
EST: gi|31354051|gb|CD438408.1|CD438408
EST:     ACGTGGATGAGCCTGTTTGTGAACCAGTAAAGAAGACTTATGCTTCCATC                         CTAAAAACCGCAAAGGCTCCTCCTGCATTCCCAGTAGCCCAGCAAGTACCT
genomic: ACGTGGATGAGCCTGTTTGTGAACCAGTAAAGAAGACTTATGCTTCCATCgtatgtcact ... attcatgcagCTAAAAACCGCAAAGG---CTCCTGCATTCCCAGTAGCCCAGCAAGTACCT
EST: gi|166513160|gb|EG113288.1|EG113288
EST:     CTTATGCTTCCATC                         CTAAAAACCGCAAAGGCTCCTGCATTCCCAGTAGCCCAGCAAGTACCTGTG
genomic: CTTATGCTTCCATCgtatgtcact ... attcatgcagCTAAAAACCGCAAAGGCTCCTGCATTCCCAGTAGCCCAGCAAGTACCTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgacatcttgcctgatgcatctttaaaactacacttgactgattcatgcagCTAAAAACCGCAAAGGCTCCTGCATTCCCAGTAGCCCAGCAAGTACCTGTGAGTAAGACTTCTCACCCTACAACAGAGTCAAACCAAACCCAGCATTCAG
                                        gactgat  putative branch site (score: 3)
                      atctttaaaa  TA-rich tract