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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaattaacttgctgaatgtatggtctataaataccaaaggacttatagactaacttggctttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGG

Basic information

species Zea mays
transcript GRMZM2G167886_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167886_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os09g12550.1 (Oryza sativa), 3'ss of exon 4
----gttaattaacttgctgaatgtatggtctataaataccaaaggacttatagactaacttggctttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGG---
| ||| | |||||||| |||| ||| || ||| ||||| |||||||| |||| || | ||||||||||||||||| |||||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||
gtaagctaaaggatatgctgaatatatgttctg--aacggaaaaaaactta--gactaactacacttt-tctctagTGGTGACCATACTGTTAAAATAATCGATTGCCAAACTGGGAAATGTTTGAAAGTGTTGCTTGGACATTGGCGCACTCCATGGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87298785|gb|DY470788.1|DY470788
EST:     TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACAC---A-                         TGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
genomic: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAGgttaattaac ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
EST: gi|18384883|gb|BM418082.1|BM418082
EST:     TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACA-T-G                         -G-TGACCATACTGCCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
genomic: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAGgttaattaac ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
EST: gi|76015702|gb|DT942872.1|DT942872
EST:     TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAG                         TGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
genomic: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAGgttaattaac ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
EST: gi|18384882|gb|BM418081.1|BM418081
EST:     TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACA-T-G                         -G-TGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
genomic: TTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAGTAGgttaattaac ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtatggtctataaataccaaaggacttatagactaacttggctttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGG
                                gactaac  putative branch site (score: 1)
 ctttatcccc  putative PPT
 tctataaata  TA-rich tract