1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttcagtattttgattaccctttggctgtttatttacatgtactattgtttggtgttttggcctggttatggacctgactttctattttctgtcatatagTGGATGGTTGATGAAAAGGAATTAAGAATCATCCATTACACACTGGGTCCCCTAAAACCCTGGGACTGGTTCACAGCGTGGCTTGTAAAACCTGTTGAAA
species | Zea mays |
transcript | GRMZM2G166903_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTCTACCTTGTATAATGCTGATGTTGGTCTTTACATGCTAACAAACAAG TGGATGGTTGATGAAAEST: gi|50326138|gb|CO521264.1|CO521264
genomic: TTTCTACCTTGTATAATGCTGATGTTGGTCTTTACATGCTAGCAAACAAGgtaagactcc ... tgtcatatagTGGATGGTTGATGAAA
EST: TTTCTACCTTGTATAATGCTGATGTTGGTCTTTACATGCTAGCAAACAAG TGGATGGTTGATGAAAAGGAATTAAGAATCATCCATTACACACTGGGTCCC
genomic: TTTCTACCTTGTATAATGCTGATGTTGGTCTTTACATGCTAGCAAACAAGgtaagactcc ... tgtcatatagTGGATGGTTGATGAAAAGGAATTAAGAATCATCCATTACACACTGGGTCCC
ttgtttggtgttttggcctggttatggacctgactttctattttctgtcatatagTGGATGGTTGATGAAAAGGAATTAAGAATCATCCATTACACACTGGGTCCCCTAAAACCCTGGGACTGGTTCACAGCGTGGCTTGTAAAACCTGTTGAAA
acctgac putative branch site (score: 51)
ctttctattttctgtc CT-rich tract
tttctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcagtattttgattaccctttggctgtttatttacatgtactattgtttggtgttttggcctggttatggacctgactttctattttctgtcatatagTGGATGGTTGATGAAAAGGAATTAAGAATCATCCATTACACACTGGGTCCCCTAAAACCCTGGGACTGGTTCACAGCGTGGCTTGTAAAACCTGTTGAAA
- - - - - - - - - - - -ggctgtt
- - - - - - - - - - - - - - - - - - catgtac
- - - - - - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggacctg