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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttgaacgctgagccatttttgtactcatatttcaccgttctgatcactgcatgcatgacaatgagcagGTATTTTCTATATTTGAAGATCTTTGTATATCTGTGGATTGTGTTGCTACCAGTGAAGTTAGAATTTCTGTGTCACTTGATCCATCAAAGATTTTGAGTA

Basic information

species Zea mays
transcript GRMZM2G166366_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166366_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g70300.2 (Oryza sativa), 3'ss of exon 9
gtacgttgaacg-ctgagccatt--tttgtactcatatttcaccgttctgatcactgcatgcatgacaatgagcagGTATTTTCTATATTTGAAGATCTTTGTATATCTGTGGATTGTGTTGCTACCAGTGAAGTTAGAATTTCTGTGTCACTTGATCCATCAAAGATTTTGAGTA
||| ||| | |   ||  ||| |  |||  | ||| || |||   |||||||| ||   || |||    |||| |||| || |||||||| ||||||||  | |||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||| | ||| |
gtatgttcagcaattggtccagtaattttaattcacatgtcattattctgatcgctctctgtatgcgcttgagaagGTCTTCTCTATATTCGAAGATCTAGGGATATCTGTAGATTGTGTGGCTACTAGTGAAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGGAGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttttgtactcatatttcaccgttctgatcactgcatgcatgacaatgagcagGTATTTTCTATATTTGAAGATCTTTGTATATCTGTGGATTGTGTTGCTACCAGTGAAGTTAGAATTTCTGTGTCACTTGATCCATCAAAGATTTTGAGTA
                        ttctgat  putative branch site (score: 3)
           tcatattt  TA-rich tract