1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gctgaatcagaatcagtttctcaaatcgtttgtcaggattccaatctaatcgcattacacttcaacaattttatgatgttttccccatcttgacctgcagCAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAAGAATTGAGGATGCAGGGGGCTTTGTTATGTGGGCTG
species | Zea mays |
transcript | GRMZM2G166035_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTGCAAATGTTGGAGATTCTAGAGCTGTTATTTCTAAAGGAGGACAGG CGATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAAEST: gi|6826953|gb|AW330596.1|AW330596
genomic: TGTTGCAAATGTTGGAGATTCTAGAGCTGTTATTTCTAAAGGAGGACAGGgtaagtttac ... tgacctgcagCAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAA
EST: TGTTGCAAATGTTGGAGATTCTAGAGCTGNTATTTCTAAAGGAGGACAGG CAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAAEST: gi|19855109|gb|BQ060161.1|BQ060161
genomic: TGTTGCAAATGTTGGAGATTCTAGAGCTGTTATTTCTAAAGGAGGACAGGgtaagtttac ... tgacctgcagCAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAA
EST: TGTTGCAAATGTTGGAGATTCTAGAGCTGTTATTTCTAAAGGAGGACAGG CGATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAAEST: gi|211336615|gb|FL398412.1|FL398412
genomic: TGTTGCAAATGTTGGAGATTCTAGAGCTGTTATTTCTAAAGGAGGACAGGgtaagtttac ... tgacctgcagCAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAA
EST: TGTTGCAAATGTTGGAGATTCTAGAGCTGTTATTTCTAAAGGAGGACAGG CAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAAEST: gi|31359010|gb|CD443367.1|CD443367
genomic: TGTTGCAAATGTTGGAGATTCTAGAGCTGTTATTTCTAAAGGAGGACAGGgtaagtttac ... tgacctgcagCAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAA
EST: TGGTGCAAATGTTGGAGATTCTAGAGCTGTTATTTCTAAAGGAGGGCANG CGATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAAEST: gi|211247655|gb|FL406574.1|FL406574
genomic: TGTTGCAAATGTTGGAGATTCTAGAGCTGTTATTTCTAAAGGAGGACAGGgtaagtttac ... tgacctgcagCAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAA
EST: TGTTGCAAATGTTGGAGATTCTAGAGCTGTTATTTCTAAAGGAGGACAGG CAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAA
genomic: TGTTGCAAATGTTGGAGATTCTAGAGCTGTTATTTCTAAAGGAGGACAGGgtaagtttac ... tgacctgcagCAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAA
ctaatcgcattacacttcaacaattttatgatgttttccccatcttgacctgcagCAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAAGAATTGAGGATGCAGGGGGCTTTGTTATGTGGGCTG
tcttgac putative branch site (score: 3)
tgttttccccatctt CT-rich tract
aattttatgatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgaatcagaatcagtttctcaaatcgtttgtcaggattccaatctaatcgcattacacttcaacaattttatgatgttttccccatcttgacctgcagCAATTGCGGTTTCAAGGGATCACAAACCTGATCAGACAGATGAGAGGCAAAGAATTGAGGATGCAGGGGGCTTTGTTATGTGGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
-ctgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaat