1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaggtgcctttgttttgcatctggaggcgttttttttgaagacagaaaatctaatagtcagcaggttttctttctagttactgtcgatgtttaatcgtttttacacttatgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAAGAAAGGGGGCATGATCGTTTTGCCTGCAGGAATGTATCATCGCTTTAC
species | Zea mays |
transcript | GRMZM2G165998_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|32910309|gb|CF015121.1|CF015121
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|211136266|gb|FL235028.1|FL235028
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCG GCTACTTTGATGTGAGGGACCAATATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|42491995|gb|CK701041.1|CK701041
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCCAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|32918894|gb|CF023706.1|CF023706
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|211136272|gb|FL235034.1|FL235034
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTA-CGGTAAEST: gi|32858130|gb|CD997811.1|CD997811
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|5895571|gb|AW036817.1|AW036817
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|26557489|gb|CA829724.1|CA829724
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCG GCTACTTTGATGTGAGGGEST: gi|211136265|gb|FL235027.1|FL235027
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGG
EST: AAACACTTGCATACTGATGAAGAGATACGATTATTGCCTTGAGGGTAGCG GCTACTTTGATGTGAGGGACCAATATGATCAGTGGATCCGTGTAGCEST: gi|32851451|gb|CD991132.1|CD991132
genomic: AA-CACTTGCATACTGATGAAGAGATACGAT-ATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGC
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTANEST: gi|32915396|gb|CF020208.1|CF020208
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|32910482|gb|CF015294.1|CF015294
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|31611894|gb|CD568516.1|CD568516
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|211137218|gb|FL235045.1|FL235045
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|9731247|gb|BE509999.1|BE509999
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|32916506|gb|CF021318.1|CF021318
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|32916207|gb|CF021019.1|CF021019
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|111990462|gb|EE331881.1|EE331881
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAAGTGGATCCGTGTAGCGGTAEST: gi|74034874|gb|DT535365.1|DT535365
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCA-GTGGATCCGTGTAGCGGTA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCACCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|211135335|gb|FL235023.1|FL235023
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAEST: gi|211137219|gb|FL235046.1|FL235046
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCA
EST: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCG GCTACTTTGATGTGAGGAACCAAGATGATCAGTGGATCCGGGTAGCGGGAAEST: gi|193502968|gb|AM938541.1|AM938541
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCATGTAGCGGTGAEST: gi|40287017|gb|CK327409.1|CK327409
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|32868008|gb|CF007690.1|CF007690
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGGAAEST: gi|71770494|gb|DR968431.1|DR968431
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|211137225|gb|FL235052.1|FL235052
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|108824274|gb|EC278282.1|EC278282
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGEST: gi|21626225|gb|BQ621146.1|BQ621146
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGG
EST: AGAACACTAGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCEST: gi|32933164|gb|CF037976.1|CF037976
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATC
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAEST: gi|32858765|gb|CD998446.1|CD998446
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
EST: AGAACACTTGCATACTGATGAAGAGATACGCTATTGCCTTGAGGGCAGCG GCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
genomic: AGAACACTTGCATACTGATGAAGAGATACGATATTGCCTTGAGGGTAGCGgtaggtgcct ... tgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAA
gttttctttctagttactgtcgatgtttaatcgtttttacacttatgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAAGAAAGGGGGCATGATCGTTTTGCCTGCAGGAATGTATCATCGCTTTAC
gtttaat putative branch site (score: 903)
tgttctc putative PPT
tttaatcgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgcctttgttttgcatctggaggcgttttttttgaagacagaaaatctaatagtcagcaggttttctttctagttactgtcgatgtttaatcgtttttacacttatgttctcaagGCTACTTTGATGTGAGGGACCAAGATGATCAGTGGATCCGTGTAGCGGTAAAGAAAGGGGGCATGATCGTTTTGCCTGCAGGAATGTATCATCGCTTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG