1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgtgggcttgataactctgatgattaaatttcacatgtttctttgtgcttattcgatatcatgttctagacggctaaggcatccagtgaccacgctctttcaacctttcgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAACCTTGAAAAGAAGCTAAATGATCTGTACTACCAGCTTTGTCACGAAAGGA
species | Zea mays |
transcript | GRMZM2G165945_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAG GCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAACEST: gi|149078161|gb|EE166908.2|EE166908
genomic: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggctt ... cgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
EST: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAG GCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAACEST: gi|78087675|gb|DV516068.1|DV516068
genomic: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggctt ... cgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
EST: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAG GCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAACEST: gi|211090437|gb|FL069857.1|FL069857
genomic: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggctt ... cgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
EST: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAG GCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAACEST: gi|211129018|gb|FL016633.1|FL016633
genomic: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggctt ... cgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
EST: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAG GCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
genomic: CACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAAGgtgtgggctt ... cgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAAC
ttctagacggctaaggcatccagtgaccacgctctttcaacctttcgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAACCTTGAAAAGAAGCTAAATGATCTGTACTACCAGCTTTGTCACGAAAGGA
ctctttcaacctttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgggcttgataactctgatgattaaatttcacatgtttctttgtgcttattcgatatcatgttctagacggctaaggcatccagtgaccacgctctttcaacctttcgttctgcagGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAACCTTGAAAAGAAGCTAAATGATCTGTACTACCAGCTTTGTCACGAAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC