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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcagtggtggcataacttttatggcgatcattaattctgtttgaatttaagttaatgagtcttgtcatgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAAAAAGAACAATGTTGCTCTTGACATTGTTGACTTTGGTGAATCCGATGAT

Basic information

species Zea mays
transcript GRMZM2G165926_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165926_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 4
gtatgcagtggtggcataacttttatggcgatcattaattctgtttgaatttaagttaatgagtcttgtcatgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAAAAAGAACAATGTTGCTCTTGACATTGTTGACTTTGGTGAATCCGATGAT
          ||   ||||||| |||||          || | | ||| |    ||| ||||  || | |   | | |||| |||||||| |||||||||||||||||||| || || ||||| |||||||| ||||| ||||| ||||||||||| ||||||||||||||| ||||||||
----------gtatgataacttgtatggtacct-----ttttatatgagtcgcggttgatgatgctggcctaatctttcagCCCTGTGAAATACGACAAGAAAGTTTTGGAAACAATCGGGAAAAAGCTGAAGAAGAATAATGTGGCTCTTGACATCGTTGACTTTGGTGAAACCGATGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211424106|gb|FL416822.1|FL416822
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211184475|gb|FL377616.1|FL377616
EST:     ATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGAC-ATTGGGAAGAAGCTGAA
genomic: ATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTT-CATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|28987670|gb|CB351750.1|CB351750
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211275084|gb|FL386564.1|FL386564
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211113040|gb|FL406956.1|FL406956
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211063824|gb|FL422604.1|FL422604
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGA
EST: gi|211114756|gb|FL427457.1|FL427457
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACNAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211344022|gb|FL411922.1|FL411922
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTG
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTG
EST: gi|211503963|gb|FL378777.1|FL378777
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGT
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGT
EST: gi|211232447|gb|FL422709.1|FL422709
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGA
EST: gi|84977035|gb|DW475457.1|DW475457
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211527211|gb|FL395782.1|FL395782
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAWAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211537119|gb|FL426923.1|FL426923
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGA
EST: gi|211527210|gb|FL395781.1|FL395781
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGATAGTTTTGGAGACCATTGGGAAGA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGA
EST: gi|211307281|gb|FL401385.1|FL401385
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211408195|gb|FL391585.1|FL391585
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211011982|gb|FL416040.1|FL416040
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|34391254|gb|CF384482.1|CF384482
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211449452|gb|FL371660.1|FL371660
EST:     ATTCGCCAGAACAAGAKGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAA
genomic: AT-CGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAA
EST: gi|31664309|gb|CD573034.1|CD573034
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211296433|gb|FL375537.1|FL375537
EST:     ATCGCCAGGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGA
genomic: ATCGCCAG-AACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGA
EST: gi|211316901|gb|FL369687.1|FL369687
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTT-GGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211448431|gb|FL421136.1|FL421136
EST:     TCGCCAGAACAAGAGGCAGCAGCAGAGGGAT-ATAGCTTTTCATTGGAAG                         TCCCTGTGAAG
genomic: TCGCCAGAACAAGAGGCAGCAGCAGAGG-ATTATAGCTTT-CATTGGAAGgtatgcagtg ... tgtgtatcagTCC-TGTGAAG
EST: gi|211043017|gb|FL421681.1|FL421681
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACG
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACG
EST: gi|211520750|gb|FL372658.1|FL372658
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAG
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAG
EST: gi|211053978|gb|FL385080.1|FL385080
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTT
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTT
EST: gi|211441973|gb|FL416344.1|FL416344
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTT
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTT
EST: gi|67025094|gb|CO453843.1|CO453843
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211429413|gb|FL420679.1|FL420679
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211395632|gb|FL405425.1|FL405425
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|148954523|gb|EC899958.2|EC899958
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211264091|gb|FL400958.1|FL400958
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGGTTTTGGAGACCATTGGGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAG-TTTTGGAGACCATTGGGAA
EST: gi|211343661|gb|FL392038.1|FL392038
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGA
EST: gi|211126365|gb|FL382914.1|FL382914
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTT-GGAGAC
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGAC
EST: gi|211436970|gb|FL408932.1|FL408932
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211298705|gb|FL383932.1|FL383932
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211133670|gb|FL369480.1|FL369480
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211518320|gb|FL387244.1|FL387244
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGGAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211120944|gb|FL412610.1|FL412610
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|28987468|gb|CB351650.1|CB351650
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211284022|gb|FL376855.1|FL376855
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGAC
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGAC
EST: gi|211430981|gb|FL370244.1|FL370244
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTT-GGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|71419001|gb|DR804614.1|DR804614
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211363462|gb|FL398802.1|FL398802
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211204240|gb|FL383409.1|FL383409
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTT
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTT
EST: gi|211225557|gb|FL386125.1|FL386125
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTT-GGAGAC
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGAC
EST: gi|40334578|gb|CK368648.1|CK368648
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211413299|gb|FL391618.1|FL391618
EST:     SATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTT
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTT
EST: gi|211229603|gb|FL380020.1|FL380020
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACNAGAAAAGTTTTGGAGACCATTGGGAAGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAA-GTTTTGGAGACCATTGGGAAGAA
EST: gi|211533209|gb|FL395808.1|FL395808
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211042757|gb|FL410368.1|FL410368
EST:     CATCGCCAGAACKAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAA
EST: gi|211439859|gb|FL422473.1|FL422473
EST:     CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAG                         TCCTGGTGA-GTACGACAAGAAAGTTTTGGAGACCCAT-GGGAAGAAGCTG
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTG-TGAAGTACGACAAGAAAGTTTTGGAGACC-ATTGGGAAGAAGCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 181

CTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCCAGCTTGCTCTAAAGCATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAAAAAGAACAATGTTGCTCTTGACATTGTTGACTTTGGTGAATCCGATGAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 272

CTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCCAGCTTGCTCTAAAGCATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAAAAAGAACAATGTTGCTCTTGACATTGTTGACTTTGGTGAATCCGATGAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 275

CTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCCAGCTTGCTCTAAAGCATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAAAAAGAACAATGTTGCTCTTGACATTGTTGACTTTGGTGAATCCGATGAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 269

CTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCCAGCTTGCTCTAAAGCATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCTTTCATTGGAAGgtatgcagtg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAAAAAGAACAATGTTGCTCTTGACATTGTTGACTTTGGTGAATCCGATGAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcgatcattaattctgtttgaatttaagttaatgagtcttgtcatgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAAAAAGAACAATGTTGCTCTTGACATTGTTGACTTTGGTGAATCCGATGAT
       attaattctgtttgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcagtggtggcataacttttatggcgatcattaattctgtttgaatttaagttaatgagtcttgtcatgtgtatcagTCCTGTGAAGTACGACAAGAAAGTTTTGGAGACCATTGGGAAGAAGCTGAAAAAGAACAATGTTGCTCTTGACATTGTTGACTTTGGTGAATCCGATGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC