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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactttaacaatcatgggcagtaagtttacgagactttcttttttcgttgtccttaaatctttcatgcttccagGAAGGTATTGGAGCTTTGTGGACTGGCCTTGGTCCAAATGTCGCACGCAATGCCATAATTAACGCTGCCGAGTTGGCCAGCTATGATCAGTTCAAACAG

Basic information

species Zea mays
transcript GRMZM2G165629_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165629_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g74640.1 (Oryza sativa), 3'ss of exon 4
---------gttactt-taacaatcatgggcagtaagtttacgaga--ctttcttttttcgttgtccttaaatctttcatgcttccagGAAGGTATTGGAGCTTTGTGGACTGGCCTTGGTCCAAATGTCGCACGCAATGCCATAATTAACGCTGCCGAGTTGGCCAGCTATGATCAGTTCAAACAG
            | |  |    |||||| ||||||| || |  | |   ||  | ||  |   | |||  ||   |||||  || |||||||||||||||||||||||||||||||| ||||||||  | ||||||||||| |||||||| ||| |||||||||||||||| || ||  ||||||||
gttgctgctacaattcatggtgatcatgagcagtaaattaaaaaaaaaattcatattccccacggcctgtaaatcttcatattttcagGAAGGTATTGGAGCTTTGTGGACTGGCCTCGGTCCAAACATAGCACGCAATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAG

upper sequence: GRMZM2G165629_T02 (Zea mays), 3'ss of exon 4
lower sequence: PP1S15_443V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------------------------------------------------------------------gttactttaacaatcatgggcagtaagtttacgagactttct---tttttcgttgtccttaaatctttcatgcttccagGAAGGTATTGGAGCTTTGTGGACTGGCCTTGGTCCAAATGTCGCACGCAATGCCATAATTAACGCTGCCGAGTTGGCCAGCTATGATCAGTTCAAACAG
                                                                                 || ||||| |      |  |   |    ||      |||||    ||   || |  |   ||   | |  || ||  |||||||  |   |   ||||||||||| ||||||||||||||||| || || || || || || ||||| ||||||||||| ||||| ||  |||| |||
gtctgagccccatgatctatagctttaataaatctgagctttctaatttacactcatgatacagagcttttcttgattgacgtcactttcaatgaactctgagatggtcttgttttcctttccagcttccacgctaactaaaaggatcttgtg-ttttagGAAGGATTCACAAAATTGTGGACTGGGCTTGGTCCAAATGTCGCTCGTAACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaagtttacgagactttcttttttcgttgtccttaaatctttcatgcttccagGAAGGTATTGGAGCTTTGTGGACTGGCCTTGGTCCAAATGTCGCACGCAATGCCATAATTAACGCTGCCGAGTTGGCCAGCTATGATCAGTTCAAACAG
                                       tctttcatgcttcc  CT-rich tract
                tttctttttt  TA-rich tract