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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtattatcatcctcagacaatgactttggttgaaagtatagaggagaaacttaactttccaatgtattcttacagATGTCCATCTTGACTATGAGTCAAAGATAGCTAAATTTTTGGGGACTCCAGACTCCATTCTTTATTCATATGGGATTTCTACAATATTCAGTGTGATACC

Basic information

species Zea mays
transcript GRMZM2G165613_T02
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6194593|gb|AW146697.1|AW146697
EST:     GAAATATGGTGTTGGTTCTTGTGGTCCACGTGGCTTTTATGGAACAATTG                         ATGTCCATCTTGACTGTGAGTCAAAGAATAGCTAAATTTTTGGGGACTCCA
genomic: GAAATATGGTGTTGGTTCTTGTGGTCCACGTGGTTTTTATGGAACAATTGgtctgtatta ... attcttacagATGTCCATCTTGACTATGAGTCAAAG-ATAGCTAAATTTTTGGGGACTCCA
EST: gi|13388351|gb|BG462287.1|BG462287
EST:     TTTATGGAACAATTG                         ATGTCCATCTTGACTGTGAGTCAAAGATAGCTAAATTTTTGGGGACTCCAG
genomic: TTTATGGAACAATTGgtctgtatta ... attcttacagATGTCCATCTTGACTATGAGTCAAAGATAGCTAAATTTTTGGGGACTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgactttggttgaaagtatagaggagaaacttaactttccaatgtattcttacagATGTCCATCTTGACTATGAGTCAAAGATAGCTAAATTTTTGGGGACTCCAGACTCCATTCTTTATTCATATGGGATTTCTACAATATTCAGTGTGATACC
                            acttaac  putative branch site (score: 3)
                                            tattctt  putative PPT
            aaagtata  TA-rich tract