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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgtttctctctctctgaattttctacctcatgagtcaaaagccaaaacatactactttatgtcaaaacactgctcggtatactatcatcaccatactaattcatcaggtactaaggttcaaattatgtcctgcagCATTCCTGTGCTATGCAGCTGTTGTGCTTGCAGCAGCTTTTGTGCTCATATTCCATTTTGTCCCTGAGTATGGTCAGACACATATCATGGTATATGTTGG

Basic information

species Zea mays
transcript GRMZM2G164797_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164797_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g35060.1 (Oryza sativa), 3'ss of exon 4
gtactgtgtttctctctctctgaattttctacctcatgagtcaaaagccaaaacatactactttatgtcaaaacactgctcggtatactatcatcaccatactaattcatcaggtactaaggttcaaat-tatgtcctgcagCATTCCTGTGCTATGCAGCTGTTGTGCTTGCAGCAGCTTTTGTGCTCATATTCCATTTTGTCCCTGAGTATGGTCAGACACATATCATGGTATATGTTGG
                                 | ||    | |    || || ||| || | ||     ||| | |      ||     ||||    | | |  ||  ||| |||||||  || |||  | | |  | ||||||| ||    ||||||||  |||||||||||||||||||||||||||||||||||||||||||  | ||||||||||| ||||||||||| ||| ||||
------------------------------gtataatcctaccatgtacacaagataataatataac---aaatattagaaaatagtgactcatttagacattggtttttcaagtactaatatttaaacctttatgttccagCATTTCTACTATATGCAGCCATTGTGCTTGCAGCAGCTTTTGTGCTCATATTCCATTTTGTCCCACAATATGGTCAGACCCATATCATGGTGTATATTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71301106|gb|DR786585.1|DR786585
EST:     GCGTCAAATTGAGTCTGTGGCAGAAGTGTGGGATCTTGCGACCGAACCAG                         CATTCCTGTGCTATGCAGCTGTTGTGCTTGCAGCAGCTTTTGTGCTCATAT
genomic: GCGTCAAATTGAGTCTGTGGCAGAAGTGTGGGATCTTGCGACCGAACCAGgtactgtgtt ... tgtcctgcagCATTCCTGTGCTATGCAGCTGTTGTGCTTGCAGCAGCTTTTGTGCTCATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatcatcaccatactaattcatcaggtactaaggttcaaattatgtcctgcagCATTCCTGTGCTATGCAGCTGTTGTGCTTGCAGCAGCTTTTGTGCTCATATTCCATTTTGTCCCTGAGTATGGTCAGACACATATCATGGTATATGTTGG
             tactaat  putative branch site (score: 1)
                                    ttcaaattat  TA-rich tract