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...ttgtagttgctagaggttgataatttcttagttttgcaacttgttgcagttaagtgcatcaccactaacaaatgctacttgcttgtactcttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCTACAAG
species | Zea mays |
transcript | GRMZM2G164352_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACAAGATTGCGTA-CACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTCEST: gi|33091965|gb|CF051959.1|CF051959
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTCEST: gi|21088918|gb|BQ401231.1|BQ401231
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATAEST: gi|211520937|gb|FL382784.1|FL382784
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATA
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTCGCCAATCAATTATATGAGCTCEST: gi|32940030|gb|CF044849.1|CF044849
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTCEST: gi|32830645|gb|CD970323.1|CD970323
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTA-CNCACATTCTTCCAGTCATTGTCAATTTCTCC-AG GATAAATCATGGCGTGTTCGTTATATGGTTGCCAANTCAAT-ATATGAGCTEST: gi|211403483|gb|FL417168.1|FL417168
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAA-TCAATTATATGAGCT
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTCGCCAATCAATTATATGAGCTCEST: gi|32938569|gb|CF043388.1|CF043388
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTCEST: gi|22935744|gb|BU572019.1|BU572019
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTCGCCAATCAATTATATGAGCTCEST: gi|31349427|gb|CD433784.1|CD433784
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTCGCCAATCAATTATATGAGCTCEST: gi|32847343|gb|CD987024.1|CD987024
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTCEST: gi|31356642|gb|CD440999.1|CD440999
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTCGCCAATCAATTATATGAGCTCEST: gi|213188056|gb|FM186556.1|FM186556
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTNNCACACATTCTTCCAGTCATTGTNNNTTTCTCCCAG GANNNATCATGGCGTGTTCGTTATATEST: gi|32829962|gb|CD969640.1|CD969640
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATAT
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTCEST: gi|32851452|gb|CD991133.1|CD991133
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTCEST: gi|211356091|gb|FL413289.1|FL413289
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTAEST: gi|31355734|gb|CD440091.1|CD440091
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTA
EST: TTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATCGTGTGTTCGTTATATGGTCGCCAATCAATTATATGAGCTCEST: gi|211150174|gb|FL390449.1|FL390449
genomic: TTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
EST: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAG GATAAATCATGGCGTGTTCGTTATATGGTCGCCAATCAATTATATGAGCTC
genomic: CACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgct ... ttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTC
gcagttaagtgcatcaccactaacaaatgctacttgcttgtactcttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCTACAAG
cactaac putative branch site (score: 1)
ctcttttgttt putative PPT
ttttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtagttgctagaggttgataatttcttagttttgcaacttgttgcagttaagtgcatcaccactaacaaatgctacttgcttgtactcttttgtttagGATAAATCATGGCGTGTTCGTTATATGGTTGCCAATCAATTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT