1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgcacgcacatatgtatccagagtgcatcttacaagtttgcaggcatttttatttcgccgtatttgtaagtagagccccaggtacgtagtacctataactataacgagtcgtgtcgttctgcttggggtgaactacagGACACTGGGATCTACTTCCGAGGGCAGCGCATCTGGAACGCGGTCATCCGGCACCTCCTCTCCATTGGGATGGCCAACGCTGACCAG
species | Zea mays |
transcript | GRMZM2G164134_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGTTCGCTACTGTGACGGTGGATCTTTTGCCGGCGAGGCCTTCGACAAG GACACTGGGATCTACTTCCGAGGGCAGCGCEST: gi|50332588|gb|CO527714.1|CO527714
genomic: AGGTTCGCTACTGTGACGGTGGATCTTTTGCCGGCGAGGCCTTCGACAAGgtgcacgcac ... tgaactacagGACACTGGGATCTACTTCCGAGGGCAGCGC
EST: AGGTTCGCTACTGTGACGGTGGATCTTTTGCCGGCGAGGCCTTCGACAAG GACACTGGGATCTACTTCCGAGGGCAGCGCATCTGGAACGCGGTCATCCGGEST: gi|88755784|gb|DY539925.1|DY539925
genomic: AGGTTCGCTACTGTGACGGTGGATCTTTTGCCGGCGAGGCCTTCGACAAGgtgcacgcac ... tgaactacagGACACTGGGATCTACTTCCGAGGGCAGCGCATCTGGAACGCGGTCATCCGG
EST: AGGGTCGCTACTGTGACGGTGGATCTTTTGCCGGCGAGGCCTTCGACAAG GACACTGGGATCTACTTCCGAGGGCAGCGCATCTG
genomic: AGGTTCGCTACTGTGACGGTGGATCTTTTGCCGGCGAGGCCTTCGACAAGgtgcacgcac ... tgaactacagGACACTGGGATCTACTTCCGAGGGCAGCGCATCTG
acgtagtacctataactataacgagtcgtgtcgttctgcttggggtgaactacagGACACTGGGATCTACTTCCGAGGGCAGCGCATCTGGAACGCGGTCATCCGGCACCTCCTCTCCATTGGGATGGCCAACGCTGACCAG
ctataac putative branch site (score: 3)
tataactataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcacgcacatatgtatccagagtgcatcttacaagtttgcaggcatttttatttcgccgtatttgtaagtagagccccaggtacgtagtacctataactataacgagtcgtgtcgttctgcttggggtgaactacagGACACTGGGATCTACTTCCGAGGGCAGCGCATCTGGAACGCGGTCATCCGGCACCTCCTCTCCATTGGGATGGCCAACGCTGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC