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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacagcaattatatcatgtaggttttctggcatctagtgctacttctagccatttcacagtaccactaaaatcactggcatattctatcattgatgatttgatctatctcttccttcttttgttcagCTATGAAGTGCTGCTGACCTTGGATAGGGAGAAGCATCGATTTTATGGCCCCATATACTACTATGTTTTCAACTGTCTTCTGTTCTCACTCCTAGTTCTT

Basic information

species Zea mays
transcript GRMZM2G163426_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163426_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os09g20630.1 (Oryza sativa), 3'ss of exon 3
gtaaacagcaattatatcatgtaggttttctggcatctagtgctactt--------ctagccatttcacagtaccactaaaat-----cactggca----tattcta-----tcattgatgat-----ttgatctatctcttccttcttttgttcagCTATGAAGTGCTGCTGACCTTGGATAGGGAGAAGCATCGATTTTATGGCCCCATATACTACTATGTTTTCAACTGTCTTCTGTTCTCACTCCTAGTTCTT
||||||          | || | | |  |||||||||| ||| ||  |        ||||||||||  |  ||  |   |||      ||  ||||    ||  |||      | || |  |      |||||| ||    |  | | ||| |||||||||||||| |||||||||||||| |  |||||||||  |||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||||
gtaaactcatgcctgcttatat-gctgctctggcatctggtgttatctacgcatctctagccatttagcgctataatcgaaaagagcacaacggcacaactacactagaaagactttaagaaactttgttgatcaatgatctggtaccttt-ttcagCTATGAAGTACTGCTGACCTTGGACAAAGAGAAGCATAAATTTTACGGCCCCATATACTACTATGTTTTCAACAGCCTTCTGTTCTCACTTCTAGTTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091292|gb|DV519666.1|DV519666
EST:     ATACTTCTTCGGCTCGTTATGTTCCCTTTCTGGATCCTAAGAAGCACAAG                         CTATGAAGTGCTGCTGACCTTGGATAGGGAGAAGCATCGATTTTATGGCCC
genomic: ATACTTCTTCGGCTCGTTATGTTCCCTTTCTGGATCCTAAGAAGCACAAGgtaaacagca ... ttttgttcagCTATGAAGTGCTGCTGACCTTGGATAGGGAGAAGCATCGATTTTATGGCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactggcatattctatcattgatgatttgatctatctcttccttcttttgttcagCTATGAAGTGCTGCTGACCTTGGATAGGGAGAAGCATCGATTTTATGGCCCCATATACTACTATGTTTTCAACTGTCTTCTGTTCTCACTCCTAGTTCTT
                         tttgatctatctcttc  CT-rich tract
       atattctat  TA-rich tract