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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acagagtacagtgtccagctgttgtgcttatgaacattgctccttggcatatggctagtatgtatgattatgttgttttcccctcatctgtctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGATAATGTCTGGTCCATGCCTTACAGGATACACACAG

Basic information

species Zea mays
transcript GRMZM2G162672_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162672_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g28200.1 (Oryza sativa), 3'ss of exon 4
acagagtacagtgtccagctgttgtgcttatgaacattgctcct--tggcatatggcta-gtatgtatgattatgttgt--tttcccctcatctgtctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGATAATGTCTGGTCCATGCCTTACAGGATACACACAG
       |  |    |||    ||| |||||||||| || ||||  |||  ||   | |   || ||| |||   || |  |||   || | || |   |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
-----tcattgctgacagtacctgtacttatgaacagtgttcctcctggtgtacaaccataaatttattatttgcttatagtttattctaacctcttgtattcagGAAATTTCCACTGGACAGTTGAAGATGTTGCAAAATCTATTGTCTGCATGATAATGTCTGGTCCATGTCTTACAGGATACACACAG

upper sequence: GRMZM2G162672_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA16G19340.1 (Glycine max), 3'ss of exon 1
acagagtacagtgtccagctgtt-gtgcttatgaacattgctccttggcatatggctagtatgtatgatt-atgttgttttcccctcatctgtctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGATAATGTCTGGTCCATGCCTTACAGGATACACACAG
  | ||| |  | |  |    |   | |||      || |   |||    | |   |   |    |  || | ||  |    |    ||      |  ||||||||||| || ||||   |||| ||||| || ||||| ||||| |||||||| ||||| || |||| ||| |||||||| ||||||
--aaagttctatatttaatgctccatccttcatggtatagaatcttatattttatttgagacaacttcttgaagtcctcaatctactatgatctccggtcagGAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149038823|gb|EE155536.2|EE155536
EST:     GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTG                         GAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
genomic: GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTGgtatgctttg ... tctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
EST: gi|211379068|gb|FL028409.1|FL028409
EST:     GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTG                         GAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
genomic: GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTGgtatgctttg ... tctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
EST: gi|211302748|gb|FL028408.1|FL028408
EST:     GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTG                         GAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
genomic: GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTGgtatgctttg ... tctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
EST: gi|61119511|gb|DN560472.1|DN560472
EST:     GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTG                         GAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
genomic: GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTGgtatgctttg ... tctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
EST: gi|78120047|gb|DV538431.1|DV538431
EST:     GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTG                         GAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
genomic: GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTGgtatgctttg ... tctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
EST: gi|211379069|gb|FL028410.1|FL028410
EST:     GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGACCAGCTGCCTCTG                         GAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
genomic: GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTGgtatgctttg ... tctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
EST: gi|149080582|gb|EE169625.2|EE169625
EST:     GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTG                         GAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA
genomic: GACATGGCCTCCGCTTGTTTGGGGAGTTCTCTGTGGAGCAGCTGCCTCTGgtatgctttg ... tctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcatatggctagtatgtatgattatgttgttttcccctcatctgtctcattcagGAAATTTCCACTGGACAGTTGAAGATGTCGCAAAATCTATTGTATGCATGATAATGTCTGGTCCATGCCTTACAGGATACACACAG
                              ttttcccctcatctgt  CT-rich tract
                 tatgattat  TA-rich tract