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gtatgctcccactatttgctctctgtactttcattcaatcaacccctttggcactgtggttgtaatgctgttcaatctggaatggctagGATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAGGATCACCAGACATTGTCCATGCAAGAAGTGCCTGAAAATTCTGCACCTG
species | Zea mays |
transcript | GRMZM2G162445_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGG GATGACAACGGCAACTTGEST: gi|211495774|gb|FL137512.1|FL137512
genomic: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGGgtatgctccc ... gaatggctagGATGACAACGGCAACTTG
EST: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGG GATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAGEST: gi|211498656|gb|FL137521.1|FL137521
genomic: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGGgtatgctccc ... gaatggctagGATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAG
EST: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGG GATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAGEST: gi|148956698|gb|EC902568.2|EC902568
genomic: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGGgtatgctccc ... gaatggctagGATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAG
EST: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGG GATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAGEST: gi|211498653|gb|FL137518.1|FL137518
genomic: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGGgtatgctccc ... gaatggctagGATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAG
EST: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGG GATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAGEST: gi|211498654|gb|FL137519.1|FL137519
genomic: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGGgtatgctccc ... gaatggctagGATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAG
EST: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGG GATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAANEST: gi|211495776|gb|FL137514.1|FL137514
genomic: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGGgtatgctccc ... gaatggctagGATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAG
EST: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGG GATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAG
genomic: ACATCACTTCTTTTGTAGGCTTGCCTACTGGCTCTGTTTATCCAACAAGGgtatgctccc ... gaatggctagGATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAG
tcaatcaacccctttggcactgtggttgtaatgctgttcaatctggaatggctagGATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAGGATCACCAGACATTGTCCATGCAAGAAGTGCCTGAAAATTCTGCACCTG
ttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctcccactatttgctctctgtactttcattcaatcaacccctttggcactgtggttgtaatgctgttcaatctggaatggctagGATGACAACGGCAACTTGTTGGTCACCGAGTATGGAATGTGTGAATATAAGGATCACCAGACATTGTCCATGCAAGAAGTGCCTGAAAATTCTGCACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT