1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgtttgcgtcaaattactggtatattttacagtaggagcaaaattttctgaacaaaccaatttattatgcttctgtattctccatatttttgcacctcagGTATAGTTTGAGCTACATTCCTTTGGCACGAAGGATGGTTTCCGACCTGATGGTGAAGTTCTGTGACACTGAACTTTGAGCTGCTGCACGCAATAACAAC
species | Zea mays |
transcript | GRMZM2G161988_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGCTAACACTGATCGCTGTCATATGTGAGATCTGCGCCCTATTTTG GTATAGTTTGAGCTACATTCCTTTGGCACGAAGGATGGTTTCCGACCTGATEST: gi|67012929|gb|CO441678.1|CO441678
genomic: AAGCTGCTAACACTGATCGCTGTCATATGTGAGATCTGCGCCCTATTTTGgtaagtcata ... tgcacctcagGTATAGTTTGAGCTACATTCCTTTGGCACGAAGGATGGTTTCCGACCTGAT
EST: AAGCTGCTAACACTGATCGCTGTCATATGTGAGATCTGCGCCCTATTTTG GTATAGTTTGAGCTACATTCCTTTGGCACGAAGGATGGTTTCCGACCTGAT
genomic: AAGCTGCTAACACTGATCGCTGTCATATGTGAGATCTGCGCCCTATTTTGgtaagtcata ... tgcacctcagGTATAGTTTGAGCTACATTCCTTTGGCACGAAGGATGGTTTCCGACCTGAT
ttctgaacaaaccaatttattatgcttctgtattctccatatttttgcacctcagGTATAGTTTGAGCTACATTCCTTTGGCACGAAGGATGGTTTCCGACCTGATGGTGAAGTTCTGTGACACTGAACTTTGAGCTGCTGCACGCAATAACAAC
ttctccatattttt CT-rich tract
aaaccaatttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtttgcgtcaaattactggtatattttacagtaggagcaaaattttctgaacaaaccaatttattatgcttctgtattctccatatttttgcacctcagGTATAGTTTGAGCTACATTCCTTTGGCACGAAGGATGGTTTCCGACCTGATGGTGAAGTTCTGTGACACTGAACTTTGAGCTGCTGCACGCAATAACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - tactggt
- - - - - - - - - - - - - - - - -aggagca
- - - - - - - - - - - - - - - - - - - - - - - - -gaacaaa