Sequence
atgc intronic sequence ATGC exonic sequence...gaaaaagttagaactgcatttctttcatataaaactacaatcttgtatcaacccatcataagtgttgtagtgctgaaacaagtggcccgtaattttctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCAGCAAGGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G161418_T05 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 3'ss of exon 4
gaaaaagttag-aactgcatttctttcatataaaac-tacaatcttgtatcaacccatcataagtgttgtagtgctgaaacaagtggcccgtaattttctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCAGCAAGGAAG
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aatatggctgttaaccaaaatttctcagtgtccaccgtgatgtctggcatctatg-gtta-aattagaggtctgtttataaatcttttgtgtcctataccagGTCTGTACTGGGGCAAAGAGTGAACAACAATCCAAGCTTGCAGCAAGAAAG
upper sequence: GRMZM2G161418_T05 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 3'ss of exon 3
gaaaaagttagaactgcatttctttcatataaaactacaatcttgtatcaacccatcataagtgttgtagtgctgaaacaagtggcccgtaat---tttctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCAGCAAGGAAG
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-tttgcttgttaaccaaaatttctctgtg-ggcaccatgacctgctagca-tttgtggtggaattaaaagcatgtttataaatcttttgttgtcctttaccagGTATGTACTGGGGCAAAGAGCGAACAACAATCAAAGCTTGCAGCAAGAAAG
upper sequence: GRMZM2G161418_T05 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA03G04500.1 (Glycine max), 3'ss of exon 4
gaaaaagttagaactgcatttctttcatataaaactacaatcttgtatcaaccc-atcataagtgttgtagtg----ctgaaacaagtggcccgtaatttt---ctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCAGCAAGGAAG
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--------tttgtctcttccgctttctgtaatggctcttatttggtacccttcttgtaatggtttctctcgtgaactttaaatttaattttttatgactattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatcaacccatcataagtgttgtagtgctgaaacaagtggcccgtaattttctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCAGCAAGGAAG
ttttct CT-rich tract
taattttcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaaaagttagaactgcatttctttcatataaaactacaatcttgtatcaacccatcataagtgttgtagtgctgaaacaagtggcccgtaattttctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCAGCAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA