1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagctatgctgcctattttcattcgatcctgctaattactttgtttcattctcattgatctatttgctttggatttcagCCCCACACTCTCTCCTGGATTTGTGAAGCTGCACACACGCAAGTTTGGTACACCTTTGAACAAGTCGACCATGACAAGTGATGAGTATAAGAATGCTGTT
species | Zea mays |
transcript | GRMZM2G161337_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTATCTAAAGTGCACAATTCCAATGT CCCCACACTCTCTCCTGGATTTGTGAAGCTGCACACACGCAAGTTTGGTACEST: gi|5901211|gb|AW042311.1|AW042311
genomic: GCTATCTAAAGTGCACAATTCCAATGTgtaagctatg ... tggatttcagCCCCACACTCTCTCCTGGATTTGTGAAGCTGCACACACGCAAGTTTGGTAC
EST: GGCAGGTCCCGACTAAACATGTTGCTATCTAAAGTGCACAATTCCAATGT CCCCACACTCTCTCCTGGATTTGTGAAGCTGCACACACGCAAGTTTGGTAC
genomic: GGCAGGTCCCGACTAAACATGTTGCTATCTAAAGTGCACAATTCCAATGTgtaagctatg ... tggatttcagCCCCACACTCTCTCCTGGATTTGTGAAGCTGCACACACGCAAGTTTGGTAC
gatcctgctaattactttgtttcattctcattgatctatttgctttggatttcagCCCCACACTCTCTCCTGGATTTGTGAAGCTGCACACACGCAAGTTTGGTACACCTTTGAACAAGTCGACCATGACAAGTGATGAGTATAAGAATGCTGTT
tttgcttt CT-rich tract
taattactttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctatgctgcctattttcattcgatcctgctaattactttgtttcattctcattgatctatttgctttggatttcagCCCCACACTCTCTCCTGGATTTGTGAAGCTGCACACACGCAAGTTTGGTACACCTTTGAACAAGTCGACCATGACAAGTGATGAGTATAAGAATGCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT