1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attgattgcaattgtcttcccatctgtccacctgaactttgtttacagagtcagttcctgagaatgctgaagatgtaactgtctacctgtttgcttgcagTTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCCATCCTTCGTGAGGATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGA
species | Zea mays |
transcript | GRMZM2G160996_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA TTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCCEST: gi|211203702|gb|FL472025.1|FL472025
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcagTTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
EST: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA TTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCCEST: gi|211260639|gb|FL352273.1|FL352273
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcagTTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
EST: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA TTCTCCCTCCCAATGCCCCAAGSSTGGAAGAGATGCAATAACTAAGAACCCEST: gi|166456136|gb|EG303602.1|EG303602
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcagTTCTCCCTCCCAATGCCCCAAGG-TGGAAGAGATGCAATAACTAAGAACCC
EST: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA AEST: gi|166456136|gb|EG303602.1|EG303602
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcag-
EST: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA AEST: gi|60355783|gb|DN222756.1|DN222756
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcag-
EST: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA TTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCCEST: gi|60394073|gb|DN226943.1|DN226943
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcagTTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
EST: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA TTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcagTTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
cagagtcagttcctgagaatgctgaagatgtaactgtctacctgtttgcttgcagTTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCCATCCTTCGTGAGGATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGA
atgtaac putative branch site (score: 3)
cctgttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgattgcaattgtcttcccatctgtccacctgaactttgtttacagagtcagttcctgagaatgctgaagatgtaactgtctacctgtttgcttgcagTTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCCATCCTTCGTGAGGATCAACTTCCTCAGAAGGTTCTTCATCCTAAACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT