1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aacaattgccttgtgacagacattgttctatagaacaagtgtttttgtctcgttgccaattttgtgacaatcttgtggtgtttacttgtcatataaacagGTTGTTGGCGGTGATCCACTTCTAGAGCTACTTGCGGTCGATTGGTTCAAAGTTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGC
species | Zea mays |
transcript | GRMZM2G160927_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAGAAGTTTATGATCAGAGGGAAGACTTACTTAACAGATTATCACAAG GTTGTTGGCGGTGATCCACTTCTAGAGCTACTTGCGGTCGATTGGTTCAAAEST: gi|211488642|gb|FL313368.1|FL313368
genomic: GGGAGAAGTTTATGATCAGAGGGAAGACTTACTTAACAGATTATCACAAGgtaggatgta ... atataaacagGTTGTTGGCGGTGATCCACTTCTAGAGCTACTTGCGGTCGATTGGTTCAAA
EST: GGGAGAAGTTTATGATCAGAGGGAAGACTTACTTAACAGATTATCACAAG GTTGTTGGCGGTGATCCACTTCTAGAGCTACTTGCGGTCGATTGGTTCAAAEST: gi|33942624|gb|CF349224.1|CF349224
genomic: GGGAGAAGTTTATGATCAGAGGGAAGACTTACTTAACAGATTATCACAAGgtaggatgta ... atataaacagGTTGTTGGCGGTGATCCACTTCTAGAGCTACTTGCGGTCGATTGGTTCAAA
EST: GGGAGAAGTTTATGATCAGAGGGAAGACTTACTTAACAGATTATCACAAG GTTGTTGGCAGTGATCCACTTCTAGAGCTACTTGCGGTCGATTGGTTCAAA
genomic: GGGAGAAGTTTATGATCAGAGGGAAGACTTACTTAACAGATTATCACAAGgtaggatgta ... atataaacagGTTGTTGGCGGTGATCCACTTCTAGAGCTACTTGCGGTCGATTGGTTCAAA
tgtctcgttgccaattttgtgacaatcttgtggtgtttacttgtcatataaacagGTTGTTGGCGGTGATCCACTTCTAGAGCTACTTGCGGTCGATTGGTTCAAAGTTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGC
tcatataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaattgccttgtgacagacattgttctatagaacaagtgtttttgtctcgttgccaattttgtgacaatcttgtggtgtttacttgtcatataaacagGTTGTTGGCGGTGATCCACTTCTAGAGCTACTTGCGGTCGATTGGTTCAAAGTTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGC
- - - tgccttg
- - - - - - - - - - - - - - - - gaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - -gttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacttg