Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttgcacggaagtatccttacaatatatgctatgacagacacaatattgtttcctcaaagccaacactcttgttttcagcattaactaaaataccctcagATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAG

Basic information

species Zea mays
transcript GRMZM2G160842_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160842_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g32460.1 (Oryza sativa), 3'ss of exon 5
gttgcacggaagtatccttacaatatatgctatgacagacacaatattgtttcctc-aaagccaacactcttgttttcagcattaactaaaataccctcagATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAG
   | | |    ||||   ||| ||  ||   |||  ||||  |||||||  | |  | ||   ||    || ||||   || | | |  |  |  | |||||||||||||||||| ||||| || ||||| ||||||||| | || |||||||| || || ||||| |||||||| |||
---gtatgc---tatcgaaacattaagtgtcttga--gacaatatattgtgccttttagagtttactgaatttttttttccactga-tggatcaatcacagATATGATATAGTTGTAGATGCCACGGACAATCTTCCTACTCGATACATGATCAGTGACTGTTGTGTGTTGCTGAATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78106504|gb|DV524922.1|DV524922
EST:     GCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCTGATGCTTGCCGGGA                         ATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGAT
genomic: GCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCTGATGCTTGCCGGGAgtaagaaact ... ataccctcagATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtttcctcaaagccaacactcttgttttcagcattaactaaaataccctcagATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAG
                                      aactaaa  putative branch site (score: 2)
                                              taccctc  CT-rich tract
                                   attaactaaaata  TA-rich tract