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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatctatccctacgaagttatttttattcgcaaaacaataatggaagcatggaccggttataaatggttaattttgatctgtgaattttgtgacaccagGTACCGGTATACATAGCAGAGATATCTCCACAAAACATGAGAGGGGCTCTTGGCTCTGTGAACCAGGTTTGCCTATACTTGCAAGCATCTCATCTATTTG

Basic information

species Zea mays
transcript GRMZM2G160460_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160460_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 3'ss of exon 4
-----------------------------------------------------------------------------------tgatctatccctacgaagttatttttattcgcaaaacaataatggaagcatggaccggttataaatggttaattttgatctgtgaattttgtgacaccagGTACCGGTATACATAGCAGAGATATCTCCACAAAACATGAGAGGGGCTCTTGGCTCTGTGAACCAGGTTTGCCTATACTTGCAAGCATCTCATCTATTTG
                                                                                     |         ||| |  | |   ||||    |   || | |          | |  |  || |   ||| | |||||||||| ||| ||||| | ||||| || || ||||||||||| ||||| || |||||||||||||| ||||||||||| ||||| |||                                  
gtttgtatgagaaaacttccttcctcccttttttatgcgcacttatagtttgagtacttaacttctttgttcaagaaaaagaaaaaaaaggaataacggatatgtcaatattttggaggaaaaactctgcattgccagctatgttagagacttactattgatctgtgtattatgtgataacagGTGCCAGTTTACATAGCAGAAATATCACCTCAAAACATGAGAGGTGCTCTTGGCTCAGTGAATCAG----------------------------------

upper sequence: GRMZM2G160460_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 3'ss of exon 4
-tgatctatccctacgaagttatttttattcgcaaaacaataatggaagcatggaccggttataaatggttaa--ttttgatctgtgaattttgtgacaccagGTACCGGTATACATAGCAGAGATATCTCCACAAAACATGAGAGGGGCTCTTGGCTCTGTGAACCAGGTTTGCCTATACTTGCAAGCATCTCATCTATTTG
 | ||  | |  |   |    |||||| ||  || || ||   ||||    |  |  | |  |  |||  |||    || || |||||||| | |   ||||||| || ||||||||||||||||||||||  || ||||  ||||| || |||||||| |||||||||                                  
ctaatgaagctttttta---catttttgttgccagaagaactttggatcagttaatagttagtgcatgtataaacccttaatgtgtgaattatatcgtaccagGTGCCAGTATACATAGCAGAGATATCTCATCAGAACACAAGAGGAGCACTTGGCTCCGTGAACCAG----------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcatggaccggttataaatggttaattttgatctgtgaattttgtgacaccagGTACCGGTATACATAGCAGAGATATCTCCACAAAACATGAGAGGGGCTCTTGGCTCTGTGAACCAGGTTTGCCTATACTTGCAAGCATCTCATCTATTTG
                           ttttgat  putative branch site (score: 4)
             ttataaatggttaatt  TA-rich tract