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gttagtgtcataaattaaaactccacgtctggacctggttgtgcatacggtaccttgggaacactactaattcgtgacaaattgttaccagGTGCCAGTATACATTGCAGAGATATCTCCTCATAACATGAGAGGAGCCCTTGGCGCTGTGAACCCG
species | Zea mays |
transcript | GRMZM2G160430_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGGAGATTACTGGAAGGATTTGGTGTTGGCGTCATTTCCTACGTG GTGCCAGTATACATTGCAGAGATATCTCCTCATAACATGAGAGGAGCCCTTEST: gi|32929449|gb|CF034261.1|CF034261
genomic: TGGGGAGATTACTGGAAGGATTTGGTGTTGGCGTCATTTCCTATGTGgttagtgtca ... ttgttaccagGTGCCAGTATACATTGCAGAGATATCTCCTCATAACATGAGAGGAGCCCTT
EST: ACGTGGGGAGATTACTGGAAGGATTTGGTGTTGGCGTCATTTCCTACGTG GTGCCAGTATACATTGCAGAGATATCTCCTCATAACATGAGAGGAGCCCTTEST: gi|101387699|gb|EB815864.1|EB815864
genomic: ACGTGGGGAGATTACTGGAAGGATTTGGTGTTGGCGTCATTTCCTATGTGgttagtgtca ... ttgttaccagGTGCCAGTATACATTGCAGAGATATCTCCTCATAACATGAGAGGAGCCCTT
EST: ACGTGGGGAGATTACTGGAAGGATTTGGTGTTGGCGTCATTTCCTATGTG GTGCCAGTATACATTGCAGAGATATCTCCTCATAACATGAGAGGAGCCCTTEST: gi|32834892|gb|CD974570.1|CD974570
genomic: ACGTGGGGAGATTACTGGAAGGATTTGGTGTTGGCGTCATTTCCTATGTGgttagtgtca ... ttgttaccagGTGCCAGTATACATTGCAGAGATATCTCCTCATAACATGAGAGGAGCCCTT
EST: ACGTGGGGAGATTACTGGAAGGATTTGGTGTTGGCGTCATTTCCTACGTG GTGCCAGTATACATTGCAGAGATATCTCCTCATAACATGAGAGGAGCCCTT
genomic: ACGTGGGGAGATTACTGGAAGGATTTGGTGTTGGCGTCATTTCCTATGTGgttagtgtca ... ttgttaccagGTGCCAGTATACATTGCAGAGATATCTCCTCATAACATGAGAGGAGCCCTT
ggttgtgcatacggtaccttgggaacactactaattcgtgacaaattgttaccagGTGCCAGTATACATTGCAGAGATATCTCCTCATAACATGAGAGGAGCCCTTGGCGCTGTGAACCCG
tactaat putative branch site (score: 70)
aaattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtcataaattaaaactccacgtctggacctggttgtgcatacggtaccttgggaacactactaattcgtgacaaattgttaccagGTGCCAGTATACATTGCAGAGATATCTCCTCATAACATGAGAGGAGCCCTTGGCGCTGTGAACCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG