1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgttttatgcacatgatgttatctttattttgaatgaagtcctatcaagtgctacctgttgaagaatcggctgttgtcaactaatgcacattgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTCAGAGACCTTTGACTCAATTGTCCTTGATGAAACCAAAGATGTCCTTGT
species | Zea mays |
transcript | GRMZM2G159369_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTAC-AATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|22819386|gb|BU499476.1|BU499476
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|211334956|gb|FK966345.1|FK966345
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTAC-AATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGEST: gi|211332783|gb|FK966326.1|FK966326
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTG
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|148935523|gb|EC879564.2|EC879564
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|24763723|gb|CA398894.1|CA398894
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|32837026|gb|CD976704.1|CD976704
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|21891538|gb|BQ744751.1|BQ744751
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|211332787|gb|FK966330.1|FK966330
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|211334959|gb|FK966348.1|FK966348
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|32858375|gb|CD998056.1|CD998056
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|9254368|gb|BE344836.1|BE344836
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|88755206|gb|DY539347.1|DY539347
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|211332782|gb|FK966325.1|FK966325
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGEST: gi|111145784|gb|EE258169.1|EE258169
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTG
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|211334948|gb|FK966337.1|FK966337
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|33285626|gb|CF075421.1|CF075421
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|211334955|gb|FK966344.1|FK966344
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|31360143|gb|CD444500.1|CD444500
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|20507142|gb|BQ279504.1|BQ279504
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|26457090|gb|CA828673.1|CA828673
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|211332789|gb|FK966332.1|FK966332
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGA--CRG GGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGEST: gi|6994161|gb|AW453375.1|AW453375
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagG-TACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTG
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|211332788|gb|FK966331.1|FK966331
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTAC-AATGTCAAGATAGCTGGCATTCCTTCAAGCGTCGTGEST: gi|211332781|gb|FK966324.1|FK966324
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTG
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGACG-AG GTTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCEST: gi|32864543|gb|CF004225.1|CF004225
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGT-ACCAATGTCAAGATAGCTGCCATTCCTTCAAGC
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|211334949|gb|FK966338.1|FK966338
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAMR-AG GTTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGEST: gi|22935460|gb|BU571735.1|BU571735
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGT-ACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCG
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTEST: gi|211001445|gb|FL439450.1|FL439450
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
EST: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAG GTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
genomic: GGGTCAACGTTCTGTGGAAGCCCTTGCAGAATTTGTTAACAGCGAAGCAGgtaggcctca ... attgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTT
tcaagtgctacctgttgaagaatcggctgttgtcaactaatgcacattgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTCAGAGACCTTTGACTCAATTGTCCTTGATGAAACCAAAGATGTCCTTGT
aactaat putative branch site (score: 2)
ttgttcc putative PPT
aactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttttatgcacatgatgttatctttattttgaatgaagtcctatcaagtgctacctgttgaagaatcggctgttgtcaactaatgcacattgttccagGTACCAATGTCAAGATAGCTGCCATTCCTTCAAGCGTCGTGGTTCTGACTTCAGAGACCTTTGACTCAATTGTCCTTGATGAAACCAAAGATGTCCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG