1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgttttgtcgatactttgatactccttagaatatttagctgtgctgatcactgcattgtccaacaagaactatctaaataatgtcttgctgcttctcagGCTTGGTTACTATACCTGTACACAAGCTTTGCTTTGCGTGAGAATGTATTAATTGCGAATGGAAGTGACATTCGTCCATG
species | Zea mays |
transcript | GRMZM2G159142_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTGGATATGGGATGGATGCCTTCCAGCATTGGCTGTTCAAATTTACCAG GCTTGGTTACTATACCTGTACACAAGCTTTGCTTTGCGTGAGAATGTATTAEST: gi|7844220|gb|AW787442.1|AW787442
genomic: GGTGGATATGGGATGGATGCCTTCCAGCATTGGCTGTTCAAATTTACCAGgtgttttgtc ... tgcttctcagGCTTGGTTACTATACCTGTACACAAGCTTTGCTTTGCGTGAGAATGTATTA
EST: GGTGGATATGGGATGGATGCCTTCCAGCATTGGCTGTTCAAATTTACCAG GCTTGGTTACTATACCTGTACACAAGCTTTGCTTTGCGTGAGAATGTATTAEST: gi|12046841|gb|BF728980.1|BF728980
genomic: GGTGGATATGGGATGGATGCCTTCCAGCATTGGCTGTTCAAATTTACCAGgtgttttgtc ... tgcttctcagGCTTGGTTACTATACCTGTACACAAGCTTTGCTTTGCGTGAGAATGTATTA
EST: GGTGGATATGGGATGGATGCCTTCCAGCATTGGCTGTTCAAATTTACCAG GCTTGGTTACTATACCTGTACACAAGCTTTGCTTTGCGTGAGAATGGATTAEST: gi|7958449|gb|AW862751.1|AW862751
genomic: GGTGGATATGGGATGGATGCCTTCCAGCATTGGCTGTTCAAATTTACCAGgtgttttgtc ... tgcttctcagGCTTGGTTACTATACCTGTACACAAGCTTTGCTTTGCGTGAGAATGTATTA
EST: GGTGGATATGGGATGGATGCCTTCCAGCATTGGCTGNTCAAATTTACCAG GCTTGGTTACTATACCTGTACACAAGCTTTGCTTTGCGTGAGAATGGATTA
genomic: GGTGGATATGGGATGGATGCCTTCCAGCATTGGCTGTTCAAATTTACCAGgtgttttgtc ... tgcttctcagGCTTGGTTACTATACCTGTACACAAGCTTTGCTTTGCGTGAGAATGTATTA
tgatcactgcattgtccaacaagaactatctaaataatgtcttgctgcttctcagGCTTGGTTACTATACCTGTACACAAGCTTTGCTTTGCGTGAGAATGTATTAATTGCGAATGGAAGTGACATTCGTCCATG
atctaaa putative branch site (score: 209)
tcttgctgcttctc putative PPT
aactatctaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttttgtcgatactttgatactccttagaatatttagctgtgctgatcactgcattgtccaacaagaactatctaaataatgtcttgctgcttctcagGCTTGGTTACTATACCTGTACACAAGCTTTGCTTTGCGTGAGAATGTATTAATTGCGAATGGAAGTGACATTCGTCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG