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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaacatcgttaacaaaatatcatctcctgttttcctacttgcgatgtagtaggttctcgttttatcttgttcattgtctgagagacaacattgtgaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTACAACTATGGCCTTGAATACTATCCAAAGCTCCAGTCTTGTGTGCCTTTT

Basic information

species Zea mays
transcript GRMZM2G158097_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158097_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g36062.1 (Oryza sativa), 3'ss of exon 4
gtttaacatcgttaacaaaatatcatctcctgttttcctacttgcgatgtagtaggttctcgttttatcttgttcattgtctgagagacaacattgtgaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTACAACTATGGCCTTGAATACTATCCAAAGCTCCAGTCTTGTGTGCCTTTT
|||||||||| || |    | | |||  | |||||| || |||||    ||                  || |||||   ||||    |||||  ||||| |  ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||| || |||||||| || ||| | ||||||||||||||||||
gtttaacatcattta----acaccatagcatgttttgctgcttgctccata-----------------tttcttcatcagctgaacaccaacaacgtgaattcacagCCATTCAAGGGGAGAGTTTGTATTTGATCAATCATGGGCAGAAGCTTACTATAGCTATGGACTCGAATACTACCCCAAGTTGCAGTCTTGTGTGCCTTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766887|gb|DR964824.1|DR964824
EST:     CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG                         CCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
genomic: CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatc ... gaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
EST: gi|71318422|gb|DR795977.1|DR795977
EST:     CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG                         CCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
genomic: CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatc ... gaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
EST: gi|89761707|gb|DY689615.1|DY689615
EST:     CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG                         CCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
genomic: CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatc ... gaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
EST: gi|91873363|gb|EB403320.1|EB403320
EST:     CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTACAAG                         CCATTCTAGGGGAGAGTTTGTGTTTGATNCA-TCATGGGCA
genomic: CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatc ... gaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGAT-CAATCATGGGCA
EST: gi|76922721|gb|DV169140.1|DV169140
EST:     CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG                         CCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
genomic: CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatc ... gaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggttctcgttttatcttgttcattgtctgagagacaacattgtgaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTACAACTATGGCCTTGAATACTATCCAAAGCTCCAGTCTTGTGTGCCTTTT
          ttttatctt  TA-rich tract