1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacattcgatgcaatcaatacaactctacgcctaagtgtacacaaaagtacgattgacagccttctgcttgcagGTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATTCCGCCGCAGGTGAACCTGTGGAAGTTTGTACAATTGTAACATGGTGGTG
species | Zea mays |
transcript | GRMZM2G158069_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGG GTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATTEST: gi|33467120|gb|CF244169.1|CF244169
genomic: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGGgtaacattcg ... ctgcttgcagGTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATT
EST: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGG GTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATTEST: gi|60355066|gb|DN222039.1|DN222039
genomic: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGGgtaacattcg ... ctgcttgcagGTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATT
EST: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGG GTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATTEST: gi|71302356|gb|DR787296.1|DR787296
genomic: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGGgtaacattcg ... ctgcttgcagGTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATT
EST: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGG GTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATTEST: gi|211452737|gb|FL194370.1|FL194370
genomic: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGGgtaacattcg ... ctgcttgcagGTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATT
EST: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGG GTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATTEST: gi|78116006|gb|DV534394.1|DV534394
genomic: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGGgtaacattcg ... ctgcttgcagGTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATT
EST: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGG GTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATTEST: gi|211452736|gb|FL194369.1|FL194369
genomic: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGGgtaacattcg ... ctgcttgcagGTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATT
EST: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGG GTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATT
genomic: GGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTATTGAGAACGGgtaacattcg ... ctgcttgcagGTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATT
acaactctacgcctaagtgtacacaaaagtacgattgacagccttctgcttgcagGTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATTCCGCCGCAGGTGAACCTGTGGAAGTTTGTACAATTGTAACATGGTGGTG
gattgac putative branch site (score: 4)
ccttctgctt putative PPT
aaaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacattcgatgcaatcaatacaactctacgcctaagtgtacacaaaagtacgattgacagccttctgcttgcagGTATCGATTTGATGAGCTGAGGCCTGGTGTTTTTGCGGTTCGTCCAAAATTCCGCCGCAGGTGAACCTGTGGAAGTTTGTACAATTGTAACATGGTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG