1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ccacacataatttctgtactaaatatgctttgttagtttgcttttatttgctgtgctgctttatgaaatcctcaccgtatttttcttgccttttgttcagCTCCCTCATTAAAGCTGATTGATTTACCTGGGATAGACCAGCGAGCTGTTGATGATTCCATG
species | Zea mays |
transcript | GRMZM2G157462_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGGAGGGGCCGTGTTGATGAGATTTACCTCAAACTGCGGACCAGTACAG CTCCCTCATTAAAGCTGATTGATTTACCTGGGATAGACCAGCGAGCTGTTGEST: gi|211132360|gb|FK982427.1|FK982427
genomic: AGGGAGGGGCCGTGTTGATGAGATTTACCTCAAACTGCGGACCAGTACAGgtttgtttgt ... ttttgttcagCTCCCTCATTAAAGCTGATTGATTTACCTGGGATAGACCAGCGAGCTGTTG
EST: GGGGAGGGGCCGTGTTGATGAGATTTACCTCAAACTGCGGACCAGTACAG CTCCCTCATTAAAGCTGATTGEST: gi|71773971|gb|DR971859.1|DR971859
genomic: GGG-AGGGGCCGTGTTGATGAGATTTACCTCAAACTGCGGACCAGTACAGgtttgtttgt ... ttttgttcagCTCCCTCATTAAAGCTGATTG
EST: AGGGAGGGGCCGTGTTGATGAGATTTACCTCAAACTGCGGACCAGTACAG CTCCCTCATTAAAGCTGATTGATTTACCTGGGATAGACCAGCGAGCTGTTGEST: gi|148945776|gb|EC891060.2|EC891060
genomic: AGGGAGGGGCCGTGTTGATGAGATTTACCTCAAACTGCGGACCAGTACAGgtttgtttgt ... ttttgttcagCTCCCTCATTAAAGCTGATTGATTTACCTGGGATAGACCAGCGAGCTGTTG
EST: AGGGAGGGGCCGTGTTGATGAGATTTACCTCAAACTGCGGACCAGTACAG CTCCCTCATTAAAGCTGATTGATTTACCTGGGATAGACCAGCGAGCTGTTG
genomic: AGGGAGGGGCCGTGTTGATGAGATTTACCTCAAACTGCGGACCAGTACAGgtttgtttgt ... ttttgttcagCTCCCTCATTAAAGCTGATTGATTTACCTGGGATAGACCAGCGAGCTGTTG
atttgctgtgctgctttatgaaatcctcaccgtatttttcttgccttttgttcagCTCCCTCATTAAAGCTGATTGATTTACCTGGGATAGACCAGCGAGCTGTTGATGATTCCATG
tcctcac putative branch site (score: 214)
tatttttcttgccttt putative PPT
tttatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacacataatttctgtactaaatatgctttgttagtttgcttttatttgctgtgctgctttatgaaatcctcaccgtatttttcttgccttttgttcagCTCCCTCATTAAAGCTGATTGATTTACCTGGGATAGACCAGCGAGCTGTTGATGATTCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
ccacaca
- - - - - - - - - - - -tatgctt
- - - - - - - - - - - - - - - - - - tttgctt
- - - - - - - - - - - - - - - - - - - - - - - tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - gctgctt